F13916

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13916

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2  
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13916

Determination of introduced cDNA(s)

  • RAFL04-17-H20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-H20 - Resource: pda00572

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-17-H20 - full reading 
    AAAACCTCTC GTCTTCTCAA ATCCACTCTC ATACACAGTC ACAACAATGG 
    CTCTTTCTTC TGGAATCTTC TCTACTACTT TTCTCTGCGT CGATACGGCG 
    CCGTTGCGCA GCTCAATGTT GACTCCATCT TCGCTCCGTT TGTCCCCTAA 
    TCATCCGACT AACCTGCGCA TGGTTCGAGC TGTAACTTCC GCGGCGGCGG 
    CTTCCTCCGA CCCGACAACC ACGACCAAGA CTCGGGAGCC ACGTGGCATC 
    ATGAAGCCTC GTCCAGTGTC CCAGGCGATG CAGGATGTCG TTGGCGTTCC 
    TGAAATCCCT CGTACTCAAG CTCTCAAACG CATTTGGGCT TACATCAAGG 
    AACATGACCT TCAAGACCCA CAAAACAAGA GGGATATACT GTGCGACGAG 
    AAGCTGAAGA AGATATTTGA AGGCAAAGAA CGTGTTGGGT TCTTGGAGAT 
    TGCAAAACTC ATTGGTCCTC ACTTTCTCTG AATGAATTTT GGCTGAGAGA 
    AGACAATCAT TGGCCTATGT TTTCCTGAGC TACTAAAGGC CATGAAAGAT 
    CAGATTACAT ATTAGTAAAT TTAGGGTTTA AGAAGTTTTT ATGCAACCAA 
    GTAGTTTATA AGCCTTTGGA GGATATCTTA TGTCGGTTAT GTGCTCATTT 
    GCTTTCCCAA TGCAGTTAAA ATATTCCTCT CTTTTTTTTT TTTTTTTTGT 
    CTTAGGACTT GAAATCTCTC TAATGCATGA AGTAATGCTT TTAT

    Gene models with high sequence identity

    1. AT4G34290.1 [+] show detail - SWIB/MDM2 domain superfamily protein
      E-value: 0; Score: 99.33

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D SWIB/MDM2 domain 3.8e-23
    HMMPanther BRG-1 ASSOCIATED FACTOR 60 (BAF60) 0.0000001
    superfamily SWIB/MDM2 domain 6.1e-27
    HMMPfam SWIB/MDM2 domain 4e-29
    HMMSmart SWIB domain 1.1e-37

    See the detailed result >

    AT4G34290.1

    Model type
    Protein coding
    Short Description
    SWIB/MDM2 domain superfamily protein
    Computational Description
    SWIB/MDM2 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G14880.1); Has 1224 Blast hits to 1123 proteins in 258 species: Archae - 0; Bacteria - 216; Metazoa - 147; Fungi - 184; Plants - 430; Viruses - 12; Other Eukaryotes - 235 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR