F13933

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13933

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13933

Determination of introduced cDNA(s)

  • RAFL06-86-M10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-86-M10 - Resource: pda03900

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-86-M10 - full reading 
    ATTTTCGGCA AAATAAAAAA CAAATGTTGC AATTTCCTTG AATGATTCTT 
    CTGGTTAACG GAGGAGCCGC TACTTCAATC CATCCCAACG CCGCTCGATT 
    TTATCGAATT GGGACCATGA GTCGCCAAAT TCACGGAGCT GTATCTTCTT 
    CTAAGCACAT CTCCTTAAAA ACCCAACACC CCCTCTCAGA TTCCAACTCA 
    GCCTATGGAG CTTCTGGGTC GGAGACTCGA GTGTATACCC GGAAAAAAAG 
    GCTAAAGCAG GAACCTTTTG AGCCTCTGGA GAAATATTCC GGCAAAGGAG 
    TCAATACCCA CAAACTGTGT GGTTTACCCG ATATAGAAGA TTTTGCTTAC 
    AAAAAGACTA TTGGATCTCC TTCATCTAGC AGGTCAACGG AAACTAGCAT 
    CACTGTGACT TCAGTCAAAA CAGCAGGATA TCCGCCTGAA AACTGGGTCG 
    AAGTGCTCGA GGGTATTCGT CAAATGAGAT CTTCTGAAGA TGCACCAGTT 
    GATTCTATGG GATGTGATAA AGCCGGAAGC TTTCTACCTC CCACGGAAAG 
    AAGATTTGCT GTCTTGCTAG GAGCACTTCT TTCAAGTCAG ACAAAAGATC 
    AAGTTAATAA CGCGGCAATA CATCGTCTTC ATCAAAACGG CCTTCTTACT 
    CCCGAAGCGG TTGACAAAGC TGATGAATCA ACCATAAAAG AATTGATCTA 
    TCCGGTTGGA TTTTATACAA GGAAGGCTAC CTATATGAAG AAAATAGCTA 
    GAATTTGTCT AGTGAAATAT GACGGAGACA TTCCAAGCTC TTTGGACGAC 
    CTGCTGTCTC TTCCAGGGAT TGGTCCCAAG ATGGCCCATC TGATTCTGCA 
    TATAGCATGG AATGATGTCC AAGGCATATG TGTAGACACA CATGTGCATC 
    GCATTTGCAA TCGACTTGGT TGGGTGTCTC GTCCAGGAAC CAAACAGAAA 
    ACTACATCTC CAGAGGAAAC AAGAGTAGCT TTGCAACAAT GGCTTCCAAA 
    GGAAGAATGG GTTGCCATTA ACCCGCTTTT GGTGGGGTTT GGACAAATGA 
    TTTGCACACC AATAAGACCA CGCTGCGAAG CCTGCAGTGT CAGTAAGCTT 
    TGTCCTGCTG CATTCAAAGA AACATCAAGC CCATCTTCCA AGTTGAAGAA 
    ATCTAACCGA AGCAAAGAAC CATGATCCGA AGTCCAAGAC TTTTGTATTT 
    TGAGTAAAAC AAAAAAAAAA ACCATTTTTT GATTAGTTTC TCTTTGCATC 
    CAAGAAAACT GTTAGAGCTT CGAGGCTTGC AATGTTGATA ATGAAAACTT 
    GTCGATGTAT ATTAATTAGG AAGCTTGCAG GTAATTAATT AATTACAAAA 
    AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT2G31450.2 [+] show detail - DNA glycosylase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Helix-hairpin-helix DNA-binding motif, class 1 0.409999992938068
    PatternScan Endonuclease III, conserved site-2 0
    HMMPfam HhH-GPD domain 3e-18
    HMMPfam Helix-hairpin-helix motif 3.6e-06
    HMMSmart Endonuclease III-like, iron-sulphur cluster loop motif 8.09999844976855e-05
    HMMPanther PTHR10359 1.39999277195138e-102
    PatternScan Endonuclease III, iron-sulphur binding site 0
    HMMPanther PTHR10359:SF2 1.39999277195138e-102
    Gene3D G3DSA:1.10.1670.10 2.39999798157241e-34
    HMMSmart HhH-GPD domain 2.99998750445706e-52
    superfamily DNA glycosylase 1.3e-59

    See the detailed result >

    AT2G31450.2

    Model type
    Protein coding
    Short Description
    DNA glycosylase superfamily protein
    Computational Description
    ATNTH1; CONTAINS InterPro DOMAIN/s: Helix-hairpin-helix motif (InterPro:IPR000445), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Endonuclease III, iron-sulphur binding site (InterPro:IPR004035), DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), Endonuclease III, conserved site-2 (InterPro:IPR004036), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: endonuclease III 2 (TAIR:AT1G05900.2); Has 14133 Blast hits to 14127 proteins in 2683 species: Archae - 365; Bacteria - 9377; Metazoa - 224; Fungi - 192; Plants - 158; Viruses - 0; Other Eukaryotes - 3817 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR