F13936

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13936

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13936

Determination of introduced cDNA(s)

  • RAFL09-17-G19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-17-G19 - Resource: pda17654

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-17-G19 - full reading 
    CCCGACCTCT TATTTTCATC TGCTTTTGAA TTTCAAACCT TCACATAAAA 
    AAAATACTTT TGAATCCGTG TTTCATTCAT CGAATCTTTT TCCGATAACT 
    ATGGCTGAGG AAATCAAGAA TGTTCCTGAA CAGGAGGTGC CAAAGGTAGC 
    AACAGAGGAA TCATCGGCAG AGGTTACAGA TCGTGGATTG TTCGATTTCT 
    TGGGAAAGAA GAAAGACGAA ACAAAACCAG AGGAGACTCC GATCGCTTCA 
    GAGTTTGAGC AGAAGGTTCA TATTTCAGAG CCGGAGCCAG AGGTTAAACA 
    CGAAAGTCTT CTTGAAAAGC TTCACCGAAG CGACAGTTCT TCTAGCTCCT 
    CAAGTGAGGA AGAAGGTTCA GATGGTGAGA AGAGGAAGAA GAAGAAGGAG 
    AAGAAGAAGC CAACTACTGA AGTTGAGGTA AAGGAGGAAG AGAAGAAAGG 
    GTTTATGGAG AAGTTGAAAG AGAAGCTTCC TGGACACAAG AAACCTGAAG 
    ACGGTTCAGC CGTCGCTGCG GCACCGGTGG TTGTTCCTCC TCCTGTGGAA 
    GAAGCGCATC CAGTGGAGAA GAAAGGGATT CTTGAGAAGA TTAAGGAGAA 
    GCTTCCAGGA TACCACCCTA AGACCACCGT AGAGGAGGAG AAGAAAGATA 
    AAGAATAAGA AGATTATCAT TAAAGATATT AAGAATAATG ATGGTTGATT 
    TGCTTTGTTT TTTTTTTTTT TTATTGTGAT GATTGATCAT CTTTTGCTTT 
    TGTGATGTGT AAGTTTGTTG GCTTTTTTGT TGATTACAAT TTCTTATTTT 
    CTCTTGTATA TGGTTTTTAA AAACAAAAGA TCTCAAGGTA TTTTAATGGT 
    AAAAAAAAAA

    Gene models with high sequence identity

    1. AT1G76180.1 [+] show detail - Dehydrin family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Dehydrin 4e-23
    PatternScan Dehydrin 0
    PatternScan Dehydrin 0
    PatternScan Dehydrin 0

    See the detailed result >

    AT1G76180.1

    Model type
    Protein coding
    Short Description
    Dehydrin family protein
    Curator Summary
    Encodes a dehydrin protein whose expression is induced early on in response to dehydration stress. This gene's expression to cold occurs in two waves, with early induction occurring within 1 h and secondary induction occurring 5 h after the beginning of cold stress. Expression is also induced in response to ABA but not in response to 2,4-D, BA, and GA3. ERD14 protein is capable of binding Ca2+, especially when the protein is phosphorylated.
    Computational Description
    EARLY RESPONSE TO DEHYDRATION 14 (ERD14); FUNCTIONS IN: calcium ion binding; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: Dehydrin family protein (TAIR:AT1G20450.2); Has 4819 Blast hits to 3364 proteins in 392 species: Archae - 4; Bacteria - 256; Metazoa - 1221; Fungi - 272; Plants - 1466; Viruses - 16; Other Eukaryotes - 1584 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR