F13946

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13946

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13946

Determination of introduced cDNA(s)

  • RAFL06-68-L02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-68-L02 - Resource: pda03307

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-68-L02 - full reading 
    GAGAGAGAGA TAAATAAAGA GAAAACTAAA GAAGCTAGAA GATGGAGAAA 
    AGTAATGATC ATGACAAGGC TAGCCACGGC GCCTCCGGTG GTGGTGCCAC 
    GGAGAAGTGG GAGGAGACTA GCCTCGGAAT CCGAACTGCC GAGACAATGC 
    TCCGGTTAGC TCCGGTGGGC CTTTGTGTTG CAGCACTTGT TGTCATGCTT 
    AAGGACTCTG AGACTAATGA GTTCGGTTCA ATTTCTTACT CCAATCTCAC 
    AGCCTTTAGG TACTTGGTGC ACGCAAATGG AATATGTGCA GGCTACTCTC 
    TTCTATCAGC AGCCATTGCA GCGATGCCTC GTTCTTCTTC GACAATGCCT 
    CGTGTTTGGA CCTTCTTTTG TCTCGACCAG CTTCTGACCT ACCTGGTTCT 
    TGCTGCTGGA GCTGTATCAG CTGAGGTTCT ATACTTGGCT TACAATGGAG 
    ACTCAGCCAT TACTTGGAGC GATGCATGTA GCTCCTATGG CGGTTTCTGT 
    CATAGAGCCA CTGCTTCTGT TATAATCACA TTCTTTGTGG TTTGTTTCTA 
    CATCGTTCTC TCTCTAATCT CCTCTTATAA GCTCTTTACT CGCTTTGATC 
    CTCCTTCCAT TGTTGACTCC GCCAAGAATC TCGAAGTCGC TGTCTTCGGA 
    AGTTAGATCC TCCATTTGCT CTTCAAGTAC ATCTAGTTTG TCATGTTTCA 
    AATGTTGTGT GTTTTTAACT TTGGTCAAGA GAAAGAATGC TTATGTGTTT 
    GCTCTTCTTC CAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT1G17200.1 [+] show detail - Uncharacterised protein family (UPF0497)
      E-value: 0; Score: 99.87

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther NITRATE, FROMATE, IRON DEHYDROGENASE 8e-25
    HMMTigr Uncharacterised protein family UPF0497, trans-membrane plant subgroup 1.6e-23
    HMMPfam Uncharacterised protein family UPF0497, trans-membrane plant 7.8e-41

    See the detailed result >

    AT1G17200.1

    Model type
    Protein coding
    Short Description
    Uncharacterised protein family (UPF0497)
    Computational Description
    Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G14380.1); Has 681 Blast hits to 681 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 681; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR