F13947

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13947

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13947

Determination of introduced cDNA(s)

  • RAFL04-20-B02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-20-B02 - Resource: pda00596

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-20-B02 - full reading 
    ACAGAAACCA AACCAAGAGC CGGAAATCAA AAACAGTAAT AAAAGATCAA 
    CTGCAAGAAA ATGGCTCTTC CTCTCGAGCT CGAAAGCCTC ACTGAAGCCA 
    TCTCAGCTGG GATGGGAATG GGAGTTGATG AGAATGCATT GATAAGCACA 
    CTGGGGAAAT CGCAAAAGGA ACATAGAAAA TTGTTTAGGA AAGCAAGCAA 
    AAGTTTCTTT GTTGAAGATG AGGAAAGAGC TTTTGAGAAA TGTCATGATC 
    ACTTCGTCAG ACACCTCAAG CTTGAGTTCT CCCGCTTCAA TACTGCGGTG 
    GTGATGTGGG CAATGCATCC ATGGGAGAGA GATGCAAGGT TGGTGAAGAA 
    AGCTTTGAAG AAAGGAGAAG AAGCTTACAA CCTCATCGTT GAGGTCTCAT 
    GCACACGCTC TGCTGAGGAT CTCCTCGGTG CACGTAAAGC TTACCACTCT 
    CTCTTCGACC AATCAATGGA AGAAGACATT GCCTCTCACG TCCACGGTCC 
    TCAGCGCAAG TTGCTTGTGG GGCTCGTGAG TGCTTATAGA TACGAAGGAA 
    ATAAGGTGAA GGATGATTCT GCCAAATCCG ATGCTAAGAT TCTAGCCGAA 
    GCAGTGGCTT CTTCAGGCGA AGAAGCCGTG GAGAAGGATG AGGTTGTTAG 
    GATTTTGACC ACAAGAAGCA AACTTCATCT CCAACATCTC TACAAACACT 
    TTAACGAAAT CAAAGGCTCT GATCTTCTTG GGGGTGTATC TAAGTCTTCT 
    CTTCTCAATG AAGCATTGAT TTGTTTGCTC AAACCGGCTC TGTATTTCAG 
    CAAGATTTTG GATGCGTCTC TGAACAAAGA CGCAGACAAG ACTACCAAGA 
    AATGGTTGAC AAGAGTGTTC GTTACAAGAG CAGATCATAG TGATGAGATG 
    AATGAGATCA AAGAAGAGTA CAATAACCTT TATGGTGAGA CTTTGGCTCA 
    AAGAATCCAA GAGAAGATAA AAGGGAACTA CAGAGATTTC TTGCTCACAC 
    TTCTCTCCAA ATCCGATTGA TTTCGTGTTG AGAAACCTAT TACCAATACT 
    TTTGGTTATT GAAGATTTAT GATTTCCCTT TTTATGGTTT TATGTTTCTA 
    ATTCCTAAAT TTGCGTTTTC TCTACCGTTT GGTAATAAAG ACATGAAAAT 
    TTGATGAACT CGGTGAATCG AGAGTAAGAG TTTTGCGATT GTGACAATGA 
    GTGATTAATA CAAGGATTAA GCTCCAAT

    Gene models with high sequence identity

    1. AT2G38750.1 [+] show detail - annexin 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Annexin 2.8e-07
    FPrintScan Annexin 2.8e-07
    FPrintScan Annexin 2.8e-07
    FPrintScan Annexin 2.8e-07
    HMMPfam Annexin repeat 1.3e-11
    HMMPfam Annexin repeat 1.4e-06
    HMMPfam Annexin repeat 3.7e-10
    HMMPanther Annexin like protein 2e-127
    HMMPanther Annexin 2e-127
    superfamily Annexin 4e-63
    Coil coiled-coil 0
    Gene3D Annexin repeat 9.8e-15
    Gene3D Annexin repeat 7.9e-09
    HMMSmart Annexin repeat 5.9e-05
    HMMSmart Annexin repeat 0.0023

    See the detailed result >

    AT2G38750.1

    Model type
    Protein coding
    Short Description
    annexin 4
    Curator Summary
    Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins identified in Arabidopsis.
    Computational Description
    annexin 4 (ANNAT4); FUNCTIONS IN: calcium-dependent phospholipid binding, calcium ion binding; INVOLVED IN: in 6 processes; LOCATED IN: cell surface; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin (InterPro:IPR001464); BEST Arabidopsis thaliana protein match is: annexin 8 (TAIR:AT5G12380.1); Has 2371 Blast hits to 2094 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 1728; Fungi - 90; Plants - 415; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR