F14025

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14025

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14025

Determination of introduced cDNA(s)

  • RAFL09-19-H14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-H14 - Resource: pda05513

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-H14 - full reading 
    AAAATTATTT TACTTAACAA AAAAAAAAAC AAATTTTTAT TTTATCTTCC 
    ATTTTTTTTC CCCGAAATTC TCGACGGTGT TTTCCGGCGA TTCATTTTCG 
    ATGCCTGAAT CGCCGATTAC CTGAATTCAC TGAAACCCTA AAACCCTAAA 
    GTTACTGTAG TTATTAAAGC TGTGTTCTTG ATTCCAAATC TTTGCCTAAA 
    GATTCGTGCT TTTTGTTTAC TTCCGATTTG ATCTACTCAA TCTCTGGAGG 
    AAGAAGAAGT TTCAGAGATC TATTTTTGAA GCTGTGTTTG TAATTTTCCC 
    CAATTTATCA ATAATGATGA TCTTTTGGTG CTTGAATATG GAATGCTTGC 
    GGGAACGGTG TTAGTTTCCT TTTGTAGAGC TGTCATATAT TGTGTTGGTT 
    TCTTTCTACA TGGAAGCTTA CAGAGAGGAA GCTCTCAGAG TGAAACAGAT 
    CGCTGAGAGG AGATTTGCGG AGAAAGATTT CACAAGCGCT AGGAGTTATG 
    CGTTGAAAGC GAAGTCTTTG TTTCCTGATT TGGAAGGTTT ATCTCAGATG 
    GTTGCGACGT TTGAAGTTTA TTTAGCTTCT CAGACTCGAA GCGGTGGTCA 
    GATTGATTAT TACGCGGTAC TTGGACTGAA ACCGTCTGCG GGGAAAAGAG 
    AAGTGAAGAA ACAGTATAAG AAGATGGCTG TATTGCTTCA TCCTGATAAG 
    AACAAATGCA TTGGAGCTGA TGGTGCATTT CATCTCATAT CTGAAGCTTG 
    GAGTTTCTTG TCTAATGAGT TTAATAAAAG CACTTTTTAT TACAAAAGAA 
    AGAAGCATAT TGACTCCACT GAGGTTCAGA AGCATAGCAC AGAGTACATG 
    CCTGGGACTG GGACTGGGAC GGGGACTGCA GTATTTGATC GGTTTCCACC 
    ATCTTCAGAA AGGCTTGATA CTTTCTGGAC TGTATGCACC TCTTGCAAAG 
    TTCAGTATGA GTATCTGAGG AAGTATGTGA ATAAGAGGCT TTCATGTAAG 
    AACTGTCGTG GAGCATTTAT TGCTGTAGAA ACTGGTCCAG CTCCTGTTAG 
    TGCACCATTT CATTACACGC CTCCATCCCA TGCGCCTCCC TCTCATGCGC 
    CTCCATCTCA TGCGCCTCCG AGTAATGGCT ATGGTGCACA TGGTTATGAT 
    GCTATGTCAC GCATGCCCAC CAATTCCACG TATTTCTTAG GCCACTATCC 
    TGGGCAAGGA CATGGATATG ATTATAGTAC GAATGGTTCA TATGAATGGA 
    GCTCGTACTC TGGAACAACA ACCTCCCCAG GGAATCTGGA TTTGAAGCGT 
    GTGTCCTCAG TGTCTAATGG GTATCCTTAT AAGCACAGCA ACTCAGTAGT 
    CAGCGGGGGA ATAAATAAAG TCAAAGATGG TTCTAATGGG ACATGCTCGA 
    AGAAAAGCAC ACCAGGTGGT CTGATATATC CTAATCAGAT CAGCATGTCT 
    GCTCACGCGA GTGCAAATAA GGTCGGCAGA CCTGGGAAGA AAAGCAAAGT 
    TTTTATGGAA GCTGCTGCTA ATGGATTTGT TGAGAACCCT CTGAGATCTG 
    TTTCAGTATC AAAGACAGCG AATACAGATG CCAAAATGGA TCAGGATTAC 
    AAACTTCATA TCCAAAGTTC AACTAGACGT TGGTCTGCTG CATCAGTATT 
    GGATACACGG AAGCCCTTAA TTCAAAAGGC CAGAACAGAT ATCAAGCAAA 
    GATTGGAGAT GATGAGATTG GCTTTAGAGG CAGCAGCGGC TGCAGAGGAT 
    GCAACACCCC TTGATGAAAA AACTGTTCTC TCCTGTAAGT TGGGAGATGT 
    TACAGGGCGC AAAACTAACG GGCCAATAAC AGTTCCAGAC TCTGATTTCC 
    ATGACTTTGA TAAAAACAGA TCGGAGGAAT CCTTTGAGCC AAGGCAAATA 
    TGGGCAATTT ATGATGAAGA TGATGGTATG CCACGCCTAT ATTGTGTGGT 
    GAGGGAAGTA CTCTCAGTTC AACCCTTTAA GATTGACATT GCCTACTTAA 
    GCTCTAAAAC TGACATCGAG TTTGGGTCAA TGAAATGGGT ACAATATGGG 
    TTTACAAAGT CGTGTGGACA TTTCAGGATA CGAAACTCTG ACATAGTAGA 
    CCATGTTAAC ATCTTTTCGC ATCTTTTAAA AGGCAAGAAG ACAGGGAGAG 
    GTGGTTGTGT TCGAATCTTC CCCACAGCTG GGGAGATTTG GGCCGTCTAC 
    AAGAACTGGT CACTGAACTG GGACGGATCA ACACCGGACG AAGTGAGGCA 
    CCAATATGAA ATGGTCGAGA TTCTTGATGA GTATACTGAA CAGTATGGTG 
    TGTGCGTTAC CCCTCTTGTT AAATTAGAGG GCTACAAAAC CGTGTATCAC 
    AGGAGCACAA GGGAGGACAG TAAGAAGTGG ATACCAAGGT GTGAAATGTT 
    GCGGTTTTCA CATCAAGTGC CGTCTTGGTT TCTTAAAGAT GCAACCAGCG 
    GCTTTCCCGA AAACTGTTGG GACTTAGATC CAGCTGCAAT CCCCGAGGAG 
    CTGCTTCACA TCGGAGCAGG AACCAATTGA TTTCAGTGAC CCTGTAAGAG 
    AAAGATGGTT TCACTTTTCA GATTGAGACC AAGTGTAAGA GTTGTTGTAT 
    CAGCGAAGAT TGTGGAGTTT TATGAAGGAC TATTAACACG CAAAAACCAT 
    ACTGTTTGGT TCAGTGAAGC TGTTGTATTA GGCAAATGTT CAACGAGTAA 
    GCAAAGCATA GTTTGACTTT TGTTTACTCT GTTTCTTCTT TTCTTTTTCT 
    TTTTCGATTA TGTATTCGTT TCTTTGTTGA CCTTAGTGAT GACAGAATTT 
    TTACAAGTAG AGTTATAAAT GTAGCAATTA TCTTTCC

    Gene models with high sequence identity

    1. AT2G05250.1 [+] show detail - DNAJ heat shock N-terminal domain-containing protein
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Heat shock protein DnaJ, N-terminal 9e-19
    ProfileScan Heat shock protein DnaJ, N-terminal 14.424
    HMMPfam DUF3444 2.8e-78
    HMMPfam Heat shock protein DnaJ, N-terminal 9.3e-17
    Gene3D Heat shock protein DnaJ, N-terminal 4.1e-14
    PatternScan Heat shock protein DnaJ, conserved site 0
    HMMPanther DNAJ-RELATED 3.1e-70
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 3.1e-70
    HMMSmart Heat shock protein DnaJ, N-terminal 3.1e-18

    See the detailed result >

    AT2G05250.1

    Model type
    Protein coding
    Short Description
    DNAJ heat shock N-terminal domain-containing protein
    Computational Description
    DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G05230.1); Has 13630 Blast hits to 13432 proteins in 2557 species: Archae - 75; Bacteria - 5761; Metazoa - 2469; Fungi - 964; Plants - 1524; Viruses - 9; Other Eukaryotes - 2828 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR