F14038

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14038

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14038

Determination of introduced cDNA(s)

  • RAFL05-16-H14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-H14 - Resource: pda02686

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-H14 - full reading 
    ATTTTTCTCT TGCAAAGACC TCTCAGCAGC CAACGACAGT TATCAAAGCT 
    TAAGCCGTTT TAGGGTTTTA TCCTTTTGCT GAGATCCAAT CATGGCGGAT 
    GTTGAACCAG AGGTTGCTGC TGCTGGAGTT CCCAAGAAGA GGACGTTTAA 
    GAAGTTTGCC TTCAAAGGAG TTGATCTCGA TGCTCTTCTC GATATGTCTA 
    CTGATGATCT TGTCAAGCTC TTCTCTTCTC GTATTCGTAG AAGGTTCTCT 
    AGAGGTTTGA CAAGGAAGCC AATGGCTCTG ATTAAGAAGC TGAGGAAAGC 
    GAAAAGGGAG GCACCACAAG GTGAGAAGCC AGAACCAGTG AGAACCCACT 
    TGAGGAACAT GATCATCGTC CCTGAAATGA TTGGAAGCAT CATTGGAGTG 
    TACAACGGAA AGACTTTCAA CCAGGTTGAG ATCAAGCCTG AGATGATTGG 
    TCACTACCTG GCTGAGTTCT CTATCTCATA CAAGCCGGTC AAGCACGGTA 
    GGCCTGGTGT TGGTGCTACC CACTCTTCCA GATTCATTCC CCTTAAGTGA 
    AAAGCTTCTA TTGGGGAATG TGTTTACTTG CTCGTTATAT GTGGATCTAA 
    GTACGTGGAT CTCTTATGTT TTTGAAGCTT TATAATGACA TTACTTTAGA 
    AGCTTTCTCA ACTCTAGCTC TTGCGTTTTC ATTATCATGT TACAAGAGGA 
    TCTTAAATCA AATCATTTTG GATTTTTGT

    Gene models with high sequence identity

    1. AT1G04270.1 [+] show detail - cytosolic ribosomal protein S15
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribosomal protein S15, eukaryotic/archaeal 1.8e-95
    HMMPfam Ribosomal protein S19/S15 9.6e-35
    HMMPanther Ribosomal protein S15, eukaryotic/archaeal 1.3e-113
    HMMPanther Ribosomal protein S19/S15 1.3e-113
    superfamily Ribosomal protein S19/S15 1.7e-29
    PatternScan Ribosomal protein S19 conserved site 0
    HMMPIR Ribosomal protein S19/S15 1.9e-73
    FPrintScan Ribosomal protein S19/S15 7.5e-13
    FPrintScan Ribosomal protein S19/S15 7.5e-13
    FPrintScan Ribosomal protein S19/S15 7.5e-13
    Gene3D Ribosomal protein S19/S15 3.3e-27

    See the detailed result >

    AT1G04270.1

    Model type
    Protein coding
    Short Description
    cytosolic ribosomal protein S15
    Curator Summary
    Encodes cytosolic ribosomal protein S15.
    Computational Description
    cytosolic ribosomal protein S15 (RPS15); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222), Ribosomal protein S19 conserved site (InterPro:IPR020934); BEST Arabidopsis thaliana protein match is: Ribosomal protein S19 family protein (TAIR:AT5G09510.1); Has 8033 Blast hits to 8033 proteins in 2978 species: Archae - 257; Bacteria - 3802; Metazoa - 279; Fungi - 238; Plants - 1557; Viruses - 0; Other Eukaryotes - 1900 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR