F14048

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14048

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14048

Determination of introduced cDNA(s)

  • RAFL11-02-D14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-02-D14 - Resource: pda07029

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-02-D14 - full reading
    ATTCTTCTCC TCCTATCGGA CTTTGCCACA CCAGATCGGA AAATCCCAAT 
    CCTCTTTTCC TTTGTTTTTT TTGCTATCTT CAATCAAAAA CTCTCCGACA
    GATTCAATGA AGCAGCAAAA GAGATAAAAC CCTAACAAAA GTAAACAATC
    GGAGTTTTAA TCTTCTTCTT CTTCGGAGCC GGAGTTTTGT CTGATCTGTC
    GGAGAGGACG TGTCGGCATC TATTAAAATC CTAGCTGGAC TTCCACATCA
    CTTTACTCAA TTAGAAGCTG TTTTGAGTAA CACAAGTAAG TAGTAAGCTT
    ATAAAACAAT GGGAACGAGC GAAGACAAGA TGCCATTTAA GACTACCAAA
    CCAACATCTT CGGCTCAGGA AGTTCCTCCC ACACCGTATC CAGATTGGCA
    AAATTCAATG CAGGCTTATT ATGGCGGAGG AGGTACTCCA AATCCTTTTT
    TCCCATCCCC AGTTGGATCT CCTAGTCCTC ACCCCTATAT GTGGGGTGCT
    CAACACCATA TGATGCCGCC TTATGGCACC CCAGTTCCGT ACCCAGCAAT
    GTATCCCCCG GGGGCAGTCT ATGCTCATCC TAGCATGCCC ATGCCTCCTA
    ATTCTGGTCC TACCAACAAG GAGCCTGCGA AGGACCAAGC TTCTGGCAAG
    AAGTCAAAGG GGAACGCGAA AAAAAAGGCT GAAGGAGGTG ATAAAGCGCT
    CTCTGGTTCA GGGAACGATG GTGCCTCTCA TAGTGATGAA AGTGTCACAG
    CGGGTTCATC TGATGAAAAT GATGAGAATG CCAATCAACA GGAACAGGGT
    TCAATTCGAA AGCCAAGCTT TGGACAGATG CTTGCTGACG CAAGTTCTCA
    AAGTACGACT GGTGAAATCC AAGGTTCGGT GCCCATGAAG CCGGTAGCCC
    CGGGGACTAA TCTGAATATC GGGATGGACT TATGGTCTTC CCAAGCTGGT
    GTACCAGTGA AGGATGAACG AGAGCTCAAG CGGCAGAAGA GGAAACAATC
    TAACCGTGAA TCCGCTAGGC GGTCTAGATT GCGGAAGCAG GCCGAATGCG
    AACGACTTCA ACAAAGAGTA GAGAGTTTGT CGAACGAGAA TCAAAGCCTG
    AGAGATGAGC TACAGAGACT CTCAAGCGAA TGTGATAAGC TCAAGTCTGA
    GAACAACTCA ATCCAGGATG AGTTGCAGAG AGTACTTGGA GCAGAGGCTG
    TAGCTAATCT AGAACAGAAT GCTGCTGGGT CGAAAGATGG TGAAGGAACA
    AATTAACACT TAGGAAAATT GGAACTTTAC AACGGATTAT TGGGATTTTT
    CAACACCGGA TAAAAAAAAC TGAGTCCAAA GTCATTTGAG ATTACGTAAC
    TATACAATCG TTTGACATTT TTGTGTAATA GAGATTTGAC CTACAAGACT
    GTAGAAGCTG CAAAAGCTAC GATTACACTT TGTTTT

    Gene models with high sequence identity

    1. AT4G36730.1 [+] show detail - G-box binding factor 1
      E-value: 0; Score: 99.86

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMSmart Basic-leucine zipper (bZIP) transcription factor 3.3e-22
    Gene3D no description 0.00012
    PatternScan Basic-leucine zipper (bZIP) transcription factor 0
    ProfileScan Basic-leucine zipper (bZIP) transcription factor 13.679
    HMMPanther JUN DIMERIZATION PROTEIN-RELATED HUMAN 0.000076
    HMMPanther FOS TRANSCRIPTION FACTOR-RELATED 0.000076
    HMMPfam G-box binding, MFMR 2.4e-38
    HMMPfam bZIP transcription factor, bZIP-1 1.2e-21

    See the detailed result >

    AT4G36730.1

    Model type
    Protein coding
    Short Description
    G-box binding factor 1
    Curator Summary
    member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box
    Computational Description
    G-box binding factor 1 (GBF1); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), G-box binding, MFMR (InterPro:IPR012900), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic region/leucine zipper transcription factor 16 (TAIR:AT2G35530.1); Has 3905 Blast hits to 3842 proteins in 356 species: Archae - 8; Bacteria - 123; Metazoa - 1421; Fungi - 442; Plants - 1419; Viruses - 137; Other Eukaryotes - 355 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR