F14104

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14104

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14104

Determination of introduced cDNA(s)

  • RAFL05-04-N01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-04-N01 - Resource: pda00886

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-04-N01 - full reading 
    CTCCATCCGC TTCCTCACGA AAAACCCTAG CACAGCTCCG AGATCCCTTT 
    TGTCGCCATG GGAGACTCCG GCGATCCTTT CTTGCGTAAT CCAAACGCCG 
    CTGTTCAAGC TCGCGCTAAA GTTCAGAACA GAGCCAATGT TCTTCAGCTT 
    AAGCTGATGG GTCAGAGCCA CCCTACTGGC TTAACAAACA ATCTCTTGAA 
    GCTTTTTGAG CCACGTCCGC CATTGGAGTA CAAACCACCA CCAGAGAAGA 
    GAAAGTGCCC GCCTTATACA GGTATGGCTC AGTTTGTAAG TAACTTTGCT 
    GAGCCTGGGG ATCCAGAATA CGCTCCACCT AAGCCAGAAG TTGAATTACC 
    TTCGCAGAAA AGGGAAAGAA TTCATAAATT GCGACTGGAG AAAGGTGTTG 
    AAAAGGCTGC TGAGGACTTA AAGAAATATG ACCCCAATAA TGATCCAAAT 
    GCTACTGGAG ATCCATACAA GACATTGTTC GTTTCAAGAC TTAACTACGA 
    ATCCTCAGAG AGTAAGATTA AAAGGGAGTT TGAATCTTAT GGACCAATTA 
    AACGGGTTCA TTTGGTGACT GATCAGCTGA CCAATAAACC CAAAGGATAT 
    GCTTTCATTG AGTACATGCA CACCCGTGAC ATGAAAGCTG CATATAAGCA 
    AGCTGATGGA CAAAAGATTG ACGGCAGAAG AGTTTTGGTT GATGTGGAGA 
    GAGGTAGAAC CGTCCCAAAC TGGCGTCCAC GCAGGCTTGG TGGTGGACTT 
    GGGACCTCAA GAGTGGGTGG TGGTGAAGAA ATTGTTGGGG AACAACAACC 
    GCAAGGAAGA ACCTCCCAGT CAGAGGAGCC ATCGAGACCA CGGGAAGAGC 
    GTGAGAAATC TCGGGAAAAG GGAAAAGAAA GGGAAAGGTC TCGTGAGCTG 
    TCTCACGAAC AACCTCGAGA GAGGTCTCGT GACAGACCGA GAGAGGATAA 
    GCACCACAGA GACCGAGACC AAGGAGGCAG AGACAGGGAT AGGGACAGCA 
    GACGTGATCG TGACCGGACC CGTGACAGAG GAGACAGAGA CCGCCGTGAC 
    CGTGACAGGG GACGGGATCG TACTTCAAGG GATCATGACC GAGACCGCAG 
    TAGAAAGAAG GAGCGGGATT ATGAAGGAGG TGAATATGAG CATGAGGGTG 
    GTGGTCGGTC CCGTGAGAGA GATGCAGAGT ACCGTGGCGA GCCAGAAGAA 
    ACTCGTGGCT ACTATGAAGA CGATCAAGGG GACACAGACC GGTACAGTCA 
    TCGCTACGAT AAAATGGAGG AAGATGACTT CAGATATGAA CGTGAGTACA 
    AGCGGTCTAA GAGATCAGAA TCGCGAGAGT ATGTTCGTTG ATGTTTCATT 
    CGGCTGTTTA AAACTCTAAA AACTTAAGAA TCCTTTTTGT TTATTCTAAA 
    TCAAAACTTG ATGCAATTCT GTTTGTTACC TCTGAACTTG ATTGCTATTT 
    TTTCTCTTTT GAAGTTTGTC ATATTATTAA TCT

    Gene models with high sequence identity

    1. AT3G50670.1 [+] show detail - U1 small nuclear ribonucleoprotein-70K
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 2.6e-143
    ProfileScan RNA recognition motif, RNP-1 17.319
    superfamily RNA-binding domain, RBD 1.7e-23
    HMMSmart RNA recognition motif, RNP-1 1.7e-21
    Gene3D Nucleotide-binding, alpha-beta plait 1.2e-26
    HMMPfam U1 small nuclear ribonucleoprotein of 70kDa MW N-terminal 7.1e-22
    HMMPfam RNA recognition motif, RNP-1 9.3e-18

    See the detailed result >

    AT3G50670.1

    Model type
    Protein coding
    Short Description
    U1 small nuclear ribonucleoprotein-70K
    Curator Summary
    Encodes U1 snRNP 70K
    Computational Description
    U1 small nuclear ribonucleoprotein-70K (U1-70K); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U1 small nuclear ribonucleoprotein of 70kDa MW N-terminal (InterPro:IPR022023), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G43370.1); Has 287 Blast hits to 284 proteins in 72 species: Archae - 6; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR