F14108

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14108

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14108

Determination of introduced cDNA(s)

  • RAFL09-22-G20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-22-G20 - Resource: pda05626

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-22-G20 - full reading 
    AACATGCTTC AAAAATGTTA TTCTTTCTTT ATTCATCATC CGTCCCTAAT 
    AATCCGATTT CATTGTCTTG CATCAGAACC AAAACAAGAC ATTAACTGAT 
    CAATCGGAGA AAGACAAAAC CCTAAAGAAA CCAACCAAGA TTCTTCCATG 
    TCCAAGATGC AACAGCATGG AGACTAAGTT CTGTTACTAC AACAACTACA 
    ACGTAAACCA ACCTCGCCAT TTTTGTAAAG CTTATCAGAG ATATTGGACC 
    TCAGGTGGGA CCATGAGAAG TGTTCCAATC GGAGCAGGAC GGCGCAAGAA 
    CAAGAACAAC TCACCAACTT CACATTACCA CCATGTGACT ATCTCCGAAA 
    CAAATGGTCC GGTCCTTAGT TTCAGCCTCG GAGATGATCA AAAGGTCTCG 
    AGTAATAGGT TTGGTAATCA AAAGCTAGTT GCTAGGATAG AGAACAATGA 
    CGAGCGCTCT AATAACAACA CTTCGAACGG TTTGAATTGT TTTCCGGGAG 
    TTTCGTGGCC GTACACGTGG AATCCTGCGT TTTACCCGGT TTACCCTTAT 
    TGGAGCATGC CAGTGTTGTC TTCTCCGGTA AGTTCAAGTC CTACTTCTAC 
    TCTTGGTAAG CATTCGAGAG ACGAAGACGA GACGGTGAAG CAAAAACAGA 
    GGAATGGATC TGTATTGGTT CCAAAGACTT TGAGAATTGA TGATCCTAAT 
    GAAGCTGCAA AGAGTTCGAT ATGGACAACA CTTGGGATCA AGAACGAAGT 
    TATGTTCAAT GGGTTTGGTT CGAAGAAAGA GGTTAAGCTC AGTAACAAAG 
    AAGAAACAGA GACCTCACTT GTTCTTTGTG CAAACCCTGC TGCGTTATCA 
    AGATCAATCA ATTTCCATGA GCAGATGTGA TTGTATACAT ATGATATATA 
    CGTGTATGTA TGTATAGATG TGGTGGAAGA TTAAGTTAGA TCCATCAAAA 
    TCTGACTTTT TTGTTCTTTC GTTGTGGCTT ACATGAAGCT TTATAATAGC 
    TTTTGTACCA TATACTTTTT AGTCTTTTAA GTTTGATTTT TGTTGTAAGA 
    TTAAATACGA TGAAATAAAA GTTCTTTTTG ACCAAT

    Gene models with high sequence identity

    1. AT5G62430.1 [+] show detail - cycling DOF factor 1
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, Dof-type 7.9e-34
    BlastProDom Zinc finger, Dof-type 9e-37
    ProfileScan Zinc finger, Dof-type 26.878

    See the detailed result >

    AT5G62430.1

    Model type
    Protein coding
    Short Description
    cycling DOF factor 1
    Curator Summary
    Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon.
    Computational Description
    cycling DOF factor 1 (CDF1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: cycling DOF factor 3 (TAIR:AT3G47500.1); Has 1130 Blast hits to 1085 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1125; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR