F14144

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14144

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F14144

Determination of introduced cDNA(s)

  • RAFL04-13-N12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-13-N12 - Resource: pda00312

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-13-N12 - full reading 
    GCTCTTTTCT TAATTTTACT GCTAAATAGT AGTGTTTACT GTCTTCAGCC 
    GCCGTCGCCG GATTCCATTA TCGAAGGCGA CGGAAGCAGT ATCTTAGGTT 
    TTGTCCGACG AAGCTCCGTT TGATTGTTAT CGGTTCCGTT GTATTCGTCG 
    ATCTTCCATT TTCGCATTTG TTTTCTATAT CCGAAGATGG GAAGCAGTCC 
    AGCTCCGTTT GCCGATATTG GCAAGAAAGC CAAAGATCTC CTAAACAAGG 
    ATTACATTTT TGACCACAAG TTTACTCTCA CAATGCTGAG TGCTACAGGA 
    ACGGAATTTG TGGCTACTGG TTTGAAGAAG GATGATTTCT TTTTTGGCGA 
    TATAAGCACA CTATATAAAG GTCAAAACAC CATTGTTGAT CTGAAAATCG 
    ACAGCCACTC TAGTGTGTCG ACGAAAGTAA CTCTCAAAAA TCTCTTGCCA 
    TCCGCTAAAG CTGTAATTAG TTTCAAAATA CCTGATCACA AGTCTGGCAA 
    GCTGGATGTG CAATATGTTC ATCCTCATGC TACGCTCAAT TCCAGCATTG 
    GCCTCAACCC AACTCCTCTG TTAGATCTAT CAGCAACTAT CGGAAGCCAG 
    AATGTTTGCC TTGGTGGTGA AGTCAGTTTC GACACAGCTT CATCATCACT 
    AACAAAGTAC AATGCAGGGA TTGGTTTCAA CAACCAAGGC GTCTCTGCTG 
    CACTCATACT GGAGGATAAA GGGGAGAGTC TGAGAGCTAC TTACGTCCAC 
    ACAGTGAACC CAACCACATC CTTTGGTGCA GAACTGATCC GTCGCTTCTC 
    CAATTATAAC AACAGCTTCA CCGTCGGAAG CTCTCACTCT GTGGATCAAT 
    TCACAGTGGT TAAGACCAGA TTTTCTAACA GTGGGAAAGC AGGGATGGTG 
    GTCCAGAGAG AATGGAGACC GAAGTCGCAC ATCACTTTCT CAGCTGAGTA 
    TGACTCAAAG GCTGTGACCT CTTCACCAAA GCTTGGTCTC GCCCTCGCCC 
    TCAAACCATA AAACAAGAAA AGAGCTCTTA TCAGTTTGGA AAACACAAAC 
    TAAACAATTC AATTTTTCAC CAAGTGCTAA AAAAATCACC CCCAAACGAA 
    CGGTTTGTAG GGTTATTGAA TCACTTTTGC ATTAATATTT GTTTTTTCAA 
    AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT5G57490.1 [+] show detail - voltage dependent anion channel 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1, 1.6e-152
    HMMPanther VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1.6e-152
    HMMPfam Porin, eukaryotic type 1e-58

    See the detailed result >

    AT5G57490.1

    Model type
    Protein coding
    Short Description
    voltage dependent anion channel 4
    Curator Summary
    Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
    Computational Description
    voltage dependent anion channel 4 (VDAC4); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: response to bacterium, anion transport; LOCATED IN: mitochondrial outer membrane, mitochondrion, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 2 (TAIR:AT5G67500.1); Has 864 Blast hits to 864 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 407; Fungi - 143; Plants - 294; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR