F14218

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14218

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14218

Determination of introduced cDNA(s)

  • RAFL05-14-F03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-F03 - Resource: pda01271

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-14-F03 - full reading 
    TTACAGTGAT TCAAGAGGCC TTCCAGGAGT TAGGAAAGAG GTTGCTGAGT 
    TCATTCAACG GCGTGATGGG TATCCAAGTG ACCCAGAACT CATCTTTCTC 
    ACTGATGGAG CTAGCAAAGG TGTGATGCAA ATCTTGAATT GTGTTATACG 
    CGGTAATGGA GATGGGATTC TAGTTCCGGT TCCACAGTAT CCACTTTACT 
    CAGCTACCAT ATCACTGTTA GGTGGTACTC TTGTTCCTTA CTATCTTGAT 
    GAGTCTGAAA ACTGGGGACT TGATGTTGCT AACCTTCGAC AATCCGTTGC 
    TCAGGCTCGT TCTCAAGGGA TAACAGTAAG GGCAATGGTG ATCATTAACC 
    CTGGGAACCC AACTGGCCAG TGTCTAAGCG AAGCTAACAT AAGAGAGATA 
    TTGAAGTTCT GTTATAACGA GAAACTGGTT CTTCTGGGAG ACGAGGTTTA 
    TCAGCAGAAC ATATACCAGG ATGAGCGTCC CTTTATCAGC TCCAAGAAGG 
    TTTTGATGGA AATGGGTTCG CCGTTCAGCA AGGAAGTTCA GCTTGTATCT 
    TTTCACACAG TCTCTAAAGG ATATTGGGGT GAATGTGGAC AGCGAGGTGG 
    ATACTTTGAG ATGACCAACC TCCCTCCAAG GGTTGTTGAG GAGATATACA 
    AGGTTGCATC AATTGCCCTC AGCCCTAATG TCTCTGCGCA AATCTTTATG 
    GGTTTGATGG TTAATCCTCC AAAGCCTGGA GACATTTCAT ATGACCAGTT 
    CGCCCGTGAA AGCAAGGGGA TTCTTGAATC TTTGAGAAGA AGAGCAAGGC 
    TCATGACAGA TGGATTCAAC AGCTGCAAAA ACGTCGTGTG CAATTTCACA 
    GAAGGTGCAA TGTATTCGTT TCCTCAAATA CGGTTACCAA CGGGAGCTCT 
    CCAAGCTGCA AAACAAGCTG GAAAAGTGCC AGACGTTTTC TACTGTCTCA 
    AGCTCTTAGA AGCCACAGGA ATCTCCACAG TACCTGGCTC TGGATTTGGA 
    CAGAAAGAAG GTGTGTTCCA TCTGAGGACA ACAATCCTGC CAGCAGAAGA 
    TGAGATGCCG GAGATCATGG ATAGCTTCAA GAAGTTCAAC GACGAGTTCA 
    TGACTCAGTA TGATAATAAC TTTGGTTATT CGAAAATGTG ATTACTTCTT 
    CTTCGAACGA CTATTGTGTT CTGCTACACT CTTTAAAGCT AAATCTCTGT 
    AGTACACTCT TTCTCTTTGC CCTATTCTAT AAACCATATC TCTCTCTTTG 
    TGTCTCTTTT TTTTGGGTGT AAACTCTCTC TTGTGTCTCT ATTTCTATTT 
    TCAATTGGAA ACTGATTAAG ATCTTTTC

    Gene models with high sequence identity

    1. AT1G23310.1 [+] show detail - glutamate:glyoxylate aminotransferase
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Pyridoxal phosphate-dependent transferase, major domain 4.5e-64
    HMMPfam Aminotransferase, class I/II 2.1e-32
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 2 3.59999643436007e-16
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 3.6000003870074e-07
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 3.6000003870074e-07
    FPrintScan 1-aminocyclopropane-1-carboxylate synthase 3.6000003870074e-07
    HMMPanther PTHR11751 0
    HMMPanther PTHR11751:SF29 0
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 8.30001403791594e-45

    See the detailed result >

    AT1G23310.1

    Model type
    Protein coding
    Short Description
    glutamate:glyoxylate aminotransferase
    Curator Summary
    Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.
    Computational Description
    glutamate:glyoxylate aminotransferase (GGT1); FUNCTIONS IN: glycine:2-oxoglutarate aminotransferase activity, L-alanine:2-oxoglutarate aminotransferase activity, alanine-glyoxylate transaminase activity; INVOLVED IN: photorespiration; LOCATED IN: apoplast, peroxisome, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: alanine-2-oxoglutarate aminotransferase 2 (TAIR:AT1G70580.4); Has 27976 Blast hits to 27968 proteins in 2949 species: Archae - 777; Bacteria - 19095; Metazoa - 617; Fungi - 736; Plants - 1276; Viruses - 0; Other Eukaryotes - 5475 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR