F14219

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14219

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14219

Determination of introduced cDNA(s)

  • RAFL09-20-M23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-20-M23 - Resource: pda05590

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-20-M23 - full reading
    AAAGCCCTAA AAATCAGAGA TTCCATTTTC TCTTATCTCT CTCTCTCTCT 
    TTCTCTTTTT CCGATTCTGA TTCTATTTTT TCTTCACCAA CCACACAAAA
    CAATTCTACG TTTGATCTCT TCTTCTTTCT CCGTCCAAAT TAATCTCTAC
    GTTTAATTTC TCTTGTTCAA TCATGGGACA CGAAACAATG ACGCCGGCAA
    CAACAACGCT CGTGTTCACG TACGGAACTC TAAAGAGAGG ATTCTCAAAT
    CATGTCCTGA TGCAAGATCT GATCCGATCT GGTGACGCTT CTTTCAAAGG
    TGTTTACCAA ACTCTAGACA AATATCCTCT CGTCTGTGGA CCTTACCGAG
    TCCCTTTCCT CCTCAACAAA CCTGGATCGG GCTATCACGT CAACGGCGAG
    CTTTACGCGG TTTCTCCTCG CGGTCTCTCT CGTCTCGACG AGCTCGAAGG
    AATCAGTCGC GGTCATTACA TCCGGCAACC GATACGTCTC GCGGCGGCGG
    AGGAAGAAGA AGAAGAAGAA GGAGATCTGG AAACAGAGGC GCCGTCGTCG
    TGCGTGGTGG AGGCGTATTA CGCTCATAAG AGTTATGAGG AAGAGCTGTG
    GAGGAGGAAT AGAGGAAGAT CATTCGGCGC GTACACGGAA AACGAAGCGC
    GTGGATATGT GAAACGCAAT GATAGGCCTC AGCATCTTAG CTTCTTGGAT
    CATATCCGTA TTTTCGTATC TTCTCCATGT GATTGATTTT TATTTCTTTC
    GTGGTCTCTC CCGCTCGTCG CTTTTCTATG TTTGTTTGTT TTTTTCTCGG
    GACAAAAGAA ACAAAAAAAA AAACACAAAC ACAAACTAGT TTTACAACTT
    GTAAGGGTCC CACCAGTCCG TCCGTCCGTC GTCTCCGTAT CGATTTGATT
    AGAGAGATTG TTGGGTGTAA AACTTATGAT TCCCATCTTA AATAAGTTTT
    AGGTTGTTTT TGAGTTTATG GTTAATTTTC CAGTTAAAAA C

    Gene models with high sequence identity

    1. AT3G02910.1 [+] show detail - AIG2-like (avirulence induced gene) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam AIG2-like 4.8e-15
    superfamily BtrG-like (Pfam 03674) 1.5e-25
    HMMPanther TROPONIN C-AKIN-1 PROTEIN 5.1e-62
    Gene3D Butirosin biosynthesis, BtrG-like 1.3e-34

    See the detailed result >

    AT3G02910.1

    Model type
    Protein coding
    Short Description
    AIG2-like (avirulence induced gene) family protein
    Computational Description
    AIG2-like (avirulence induced gene) family protein; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: AIG2-like (avirulence induced gene) family protein (TAIR:AT5G46720.1); Has 320 Blast hits to 319 proteins in 102 species: Archae - 4; Bacteria - 64; Metazoa - 146; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR