F14241

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14241

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F14241

Determination of introduced cDNA(s)

  • RAFL09-22-D11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-22-D11 - Resource: pda08039

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-22-D11 - full reading 
    TTATTGCTTC TCCCTCAAAT ATTTTCTTAT TCGTTAAGGT TACAAAAATC 
    AAAAAGACTC GAAGAAACCT GAGATCGAAA CCCCAGCCAT GGCGGGTCGT 
    TACGGATCGC AAGTCATGAC GATGACTGTG ACCAATACTC CGTCCGCAGA 
    TCTAGCTTTT ACTAACCTCG CTTACTGCTC TTCTTCCGAT CTCCGTCAAT 
    TCTCCGTTCC CGGTTCCGAT CTCTTCCTCG CCAACGTTGC CGATAGCTTC 
    ATTCTTTCTC TCTGTGGACA TGGAAGCATC CGTGATGGAA ATATTGCTCT 
    CAATGCTATT CAAAGGCGAC ACGCTAGAGT TTCGACTGGT GATATGGTAT 
    CTGTTAGCAG ATTTGTTCCT CCTGAAAATT TTGATCTGGC TATGCTGACG 
    CTGGAGTTGG AATTTGTGAA GAAAGGAACT AAAAGCGAGC AGGTTGATGC 
    TGCTCTCCTT TCGACCCAGC TTAAGAGGAA ATACACCAAC CAGGTCTTGA 
    CTGTAGGCCA GAAAGCGACA TTTGAGTATC ATGGAACTAA TTACATTCTT 
    ACGGTCAATC GAGCGGATGT TGAGGGTCAG GATCACACGA ACGGCATTGA 
    AAGAGGGTTG CTCTCTAAAG ACACGTATAT TGTGTTTGAA GCATCAAATG 
    CAAGTGGCAT AAAGATTGTC AACCAACGGG AAGCTGCTAG CAGCAATATA 
    TTCAAACATA AGGAATTTAA CCTTGAGTCG CTGGGAATAG GTGGTCTTGG 
    TGCAGAGTTT GCTGATATAT TTAGAAGAGC TTTTGCTTCT CGTGTATTTC 
    CTCCTCATGT CACCAGCAGA CTGGGAATAA AGCATGTTAA AGGGATGCTT 
    CTTTTTGGAC CTCCTGGTAC TGGCAAAACC CTTATGGCAC GGCAAATTGG 
    AAAGATGCTT AATGGAAAGG ATCCAAAGAT CGTTAATGGG CCTGAGGTGC 
    TGAGCAAGTT TGTTGGTGAG ACAGAAAAGA ATGTAAGAGA CTTATTTGCT 
    GATGCTGAGC AAGACCAGAG GACCCTTGGT GATGCTAGTG AGTTGCATGT 
    CATTATTTTT GATGAGATTG ATGCTATTTG CAAGTCAAGA GGTTCAACCA 
    GAGATGGCAC AGGTGTCCAT GATAGTATTG TAAACCAGCT TTTGACAAAG 
    ATAGATGGTG TGGAGGCCTT AAACAATGTT TTGCTGATTG GAATGACAAA 
    CAGAAAGGAT TTGCTTGATG AAGCTCTTTT AAGGCCTGGA AGATTGGAGG 
    TTCAGGTTGA GATAAGCCTT CCTGATGAAG CTGGGCGTCT ACAAATTCTT 
    CAGATTCATA CAAATAAGAT GAAGGAAAAT TCTTTCCTTG GGACTGATAT 
    CAATCTCCAA GAGCTTGCTG CTCGAACAAA AAATTACAGT GGTGCAGAGC 
    TTGAAGGTGT TGTTAAAAGT GCTACATCAT ATGCATTAAA CAGACAACTA 
    AGCATGGATG ATCTTACAAA GCCTGTGGAA GAAGAGAATA TCAAGATCAC 
    TATGGAGGAT TTTCTCCACG CTATCTATGA AGTTCAACCT GCATTTGGAG 
    CCTCCACAGA TGACCTAGAG CGCTGCAGAC TCAATGGGAT GGTAGATTGT 
    GGTCATCGGC ATAATCACAT TTACAAAAGA GCTATGCTTC TAGTCGAGCA 
    AGTTAAAGTT AGTACTAGAA GTCCTCTAGT CACTTGCCTT CTGGAGGGGC 
    CCAGTGGAAG TGGGAAAACT GCTTTAGCAG CAACAATTGG TATCGATAGT 
    GACTTCCCAT ATGTTAAGAT AGTTTCTGCG GAAACTATGA TTGGTCTTTC 
    TGAGAGCACA AAATGTGCTC ACATTGTCAA GGTCTTTGAG GATGCATATA 
    AATCTCCAAT GAGCATCATT ATCCTTGACG ATATTGAAAG ATTGTTGGAA 
    TTCATAGCAA TCGGTCCTCG CTTTTCAAAC ATAATTTCAC AGACGCTGAT 
    GGTCCTTCTC AAACGACTTC CTCCTAAGGG GAAGAAACTT CTCGTCTTTG 
    GGACAACAAG TGAAGTAACC TTCTTAGAGT CTGTTGGTAT CTCTGATTGC 
    TTCTCTGTCA CTCACTCTGT TCCGACACTG CAAAAAGAGG ACGCAAAGAA 
    GGTGCTAAAT CAGCTTAACC TCTTCTCAGA GGATGATGTT GATTCAGCTG 
    CAGAGGCTCT CAATGACATG CCAATCAAGA AGATTTACAT GCTAATAGAA 
    ATGGCTGCGC AAGGAGAAAA CGGTGGATCT GCAGAAGCTA TCTATGCTGG 
    GAGAGAGAAA ATCAATATCA ATCATTTCTA TGATTGCTTA GGAGACTTCA 
    TTCGCTTCAC TGGCTAGTCC TTTTAAAGAT ATTCTCATGG TGATCTTGTT 
    TTTTTGGATA CAAATTTTAC TCGGGTTATG TTATTTGGTG GTGGAGTGGA 
    ACTGAGAAGG GCAATTATGT TACTCGGATC ATGTTATTTT GCTTTTTTTT 
    TTTGCTTGTT TTTGTGTGGC TAAAACACTA TTTCTTTTGA TTGTAGTTAT 
    TAATTTGTGG TTTGGTTTGA CTCCTGATTT CAACTCATAT GATGGTCC

    Gene models with high sequence identity

    1. AT4G04910.1 [+] show detail - AAA-type ATPase family protein
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan ATPase, AAA-type, conserved site 0
    HMMPfam ATPase, AAA-type, core 7.7e-38
    HMMPfam ATPase, AAA-type, core 0.0000000042
    HMMPfam ATPase, AAA-type, VAT, N-terminal 0.0000015
    HMMPfam Cell division protein 48, CDC48, domain 2 0.000025
    HMMPanther VESICULAR-FUSION PROTEIN NSF 0
    superfamily P-loop containing nucleoside triphosphate hyd 9.3e-51
    superfamily P-loop containing nucleoside triphosphate hyd 3e-31
    superfamily Cdc48 domain 2-like 9.1e-24
    superfamily Aspartate decarboxylase-like fold 1.8e-16
    HMMSmart ATPase, AAA+ type, core 2e-16
    HMMSmart ATPase, AAA+ type, core 0.0000094
    Gene3D Aspartate decarboxylase-like fold 0.0000000000028
    Gene3D no description 0.000051
    Gene3D no description 8.5e-43
    Gene3D no description 1.1e-16
    Gene3D no description 1.5e-36

    See the detailed result >

    AT4G04910.1

    Model type
    Protein coding
    Short Description
    AAA-type ATPase family protein
    Curator Summary
    N-ethylmaleimide sensitive factor
    Computational Description
    N-ethylmaleimide sensitive factor (NSF); FUNCTIONS IN: protein binding; LOCATED IN: vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30539 Blast hits to 27448 proteins in 3106 species: Archae - 1540; Bacteria - 10808; Metazoa - 4854; Fungi - 3637; Plants - 2891; Viruses - 27; Other Eukaryotes - 6782 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR