F14241

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14241

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F14241

Determination of introduced cDNA(s)

  • RAFL09-22-D11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-22-D11 - Resource: pda08039

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-22-D11 - full reading
    TTATTGCTTC TCCCTCAAAT ATTTTCTTAT TCGTTAAGGT TACAAAAATC 
    AAAAAGACTC GAAGAAACCT GAGATCGAAA CCCCAGCCAT GGCGGGTCGT
    TACGGATCGC AAGTCATGAC GATGACTGTG ACCAATACTC CGTCCGCAGA
    TCTAGCTTTT ACTAACCTCG CTTACTGCTC TTCTTCCGAT CTCCGTCAAT
    TCTCCGTTCC CGGTTCCGAT CTCTTCCTCG CCAACGTTGC CGATAGCTTC
    ATTCTTTCTC TCTGTGGACA TGGAAGCATC CGTGATGGAA ATATTGCTCT
    CAATGCTATT CAAAGGCGAC ACGCTAGAGT TTCGACTGGT GATATGGTAT
    CTGTTAGCAG ATTTGTTCCT CCTGAAAATT TTGATCTGGC TATGCTGACG
    CTGGAGTTGG AATTTGTGAA GAAAGGAACT AAAAGCGAGC AGGTTGATGC
    TGCTCTCCTT TCGACCCAGC TTAAGAGGAA ATACACCAAC CAGGTCTTGA
    CTGTAGGCCA GAAAGCGACA TTTGAGTATC ATGGAACTAA TTACATTCTT
    ACGGTCAATC GAGCGGATGT TGAGGGTCAG GATCACACGA ACGGCATTGA
    AAGAGGGTTG CTCTCTAAAG ACACGTATAT TGTGTTTGAA GCATCAAATG
    CAAGTGGCAT AAAGATTGTC AACCAACGGG AAGCTGCTAG CAGCAATATA
    TTCAAACATA AGGAATTTAA CCTTGAGTCG CTGGGAATAG GTGGTCTTGG
    TGCAGAGTTT GCTGATATAT TTAGAAGAGC TTTTGCTTCT CGTGTATTTC
    CTCCTCATGT CACCAGCAGA CTGGGAATAA AGCATGTTAA AGGGATGCTT
    CTTTTTGGAC CTCCTGGTAC TGGCAAAACC CTTATGGCAC GGCAAATTGG
    AAAGATGCTT AATGGAAAGG ATCCAAAGAT CGTTAATGGG CCTGAGGTGC
    TGAGCAAGTT TGTTGGTGAG ACAGAAAAGA ATGTAAGAGA CTTATTTGCT
    GATGCTGAGC AAGACCAGAG GACCCTTGGT GATGCTAGTG AGTTGCATGT
    CATTATTTTT GATGAGATTG ATGCTATTTG CAAGTCAAGA GGTTCAACCA
    GAGATGGCAC AGGTGTCCAT GATAGTATTG TAAACCAGCT TTTGACAAAG
    ATAGATGGTG TGGAGGCCTT AAACAATGTT TTGCTGATTG GAATGACAAA
    CAGAAAGGAT TTGCTTGATG AAGCTCTTTT AAGGCCTGGA AGATTGGAGG
    TTCAGGTTGA GATAAGCCTT CCTGATGAAG CTGGGCGTCT ACAAATTCTT
    CAGATTCATA CAAATAAGAT GAAGGAAAAT TCTTTCCTTG GGACTGATAT
    CAATCTCCAA GAGCTTGCTG CTCGAACAAA AAATTACAGT GGTGCAGAGC
    TTGAAGGTGT TGTTAAAAGT GCTACATCAT ATGCATTAAA CAGACAACTA
    AGCATGGATG ATCTTACAAA GCCTGTGGAA GAAGAGAATA TCAAGATCAC
    TATGGAGGAT TTTCTCCACG CTATCTATGA AGTTCAACCT GCATTTGGAG
    CCTCCACAGA TGACCTAGAG CGCTGCAGAC TCAATGGGAT GGTAGATTGT
    GGTCATCGGC ATAATCACAT TTACAAAAGA GCTATGCTTC TAGTCGAGCA
    AGTTAAAGTT AGTACTAGAA GTCCTCTAGT CACTTGCCTT CTGGAGGGGC
    CCAGTGGAAG TGGGAAAACT GCTTTAGCAG CAACAATTGG TATCGATAGT
    GACTTCCCAT ATGTTAAGAT AGTTTCTGCG GAAACTATGA TTGGTCTTTC
    TGAGAGCACA AAATGTGCTC ACATTGTCAA GGTCTTTGAG GATGCATATA
    AATCTCCAAT GAGCATCATT ATCCTTGACG ATATTGAAAG ATTGTTGGAA
    TTCATAGCAA TCGGTCCTCG CTTTTCAAAC ATAATTTCAC AGACGCTGAT
    GGTCCTTCTC AAACGACTTC CTCCTAAGGG GAAGAAACTT CTCGTCTTTG
    GGACAACAAG TGAAGTAACC TTCTTAGAGT CTGTTGGTAT CTCTGATTGC
    TTCTCTGTCA CTCACTCTGT TCCGACACTG CAAAAAGAGG ACGCAAAGAA
    GGTGCTAAAT CAGCTTAACC TCTTCTCAGA GGATGATGTT GATTCAGCTG
    CAGAGGCTCT CAATGACATG CCAATCAAGA AGATTTACAT GCTAATAGAA
    ATGGCTGCGC AAGGAGAAAA CGGTGGATCT GCAGAAGCTA TCTATGCTGG
    GAGAGAGAAA ATCAATATCA ATCATTTCTA TGATTGCTTA GGAGACTTCA
    TTCGCTTCAC TGGCTAGTCC TTTTAAAGAT ATTCTCATGG TGATCTTGTT
    TTTTTGGATA CAAATTTTAC TCGGGTTATG TTATTTGGTG GTGGAGTGGA
    ACTGAGAAGG GCAATTATGT TACTCGGATC ATGTTATTTT GCTTTTTTTT
    TTTGCTTGTT TTTGTGTGGC TAAAACACTA TTTCTTTTGA TTGTAGTTAT
    TAATTTGTGG TTTGGTTTGA CTCCTGATTT CAACTCATAT GATGGTCC

    Gene models with high sequence identity

    1. AT4G04910.1 [+] show detail - AAA-type ATPase family protein
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan ATPase, AAA-type, conserved site 0
    HMMPfam ATPase, AAA-type, core 7.7e-38
    HMMPfam ATPase, AAA-type, core 4.2e-09
    HMMPfam ATPase, AAA-type, VAT, N-terminal 1.5e-06
    HMMPfam Cell division protein 48, CDC48, domain 2 2.5e-05
    HMMPanther VESICULAR-FUSION PROTEIN NSF 0
    superfamily P-loop containing nucleoside triphosphate hyd 9.3e-51
    superfamily P-loop containing nucleoside triphosphate hyd 3e-31
    superfamily Cdc48 domain 2-like 9.1e-24
    superfamily Aspartate decarboxylase-like fold 1.8e-16
    HMMSmart ATPase, AAA+ type, core 2e-16
    HMMSmart ATPase, AAA+ type, core 9.4e-06
    Gene3D Aspartate decarboxylase-like fold 2.8e-12
    Gene3D no description 5.1e-05
    Gene3D no description 8.5e-43
    Gene3D no description 1.1e-16
    Gene3D no description 1.5e-36

    See the detailed result >

    AT4G04910.1

    Model type
    Protein coding
    Short Description
    AAA-type ATPase family protein
    Curator Summary
    N-ethylmaleimide sensitive factor
    Computational Description
    N-ethylmaleimide sensitive factor (NSF); FUNCTIONS IN: protein binding; LOCATED IN: vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30539 Blast hits to 27448 proteins in 3106 species: Archae - 1540; Bacteria - 10808; Metazoa - 4854; Fungi - 3637; Plants - 2891; Viruses - 27; Other Eukaryotes - 6782 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR