F14323

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14323

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14323

Determination of introduced cDNA(s)

  • RAFL06-80-E11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-80-E11 - Resource: pda03779

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-80-E11 - full reading 
    AAACCCCCAA AATTTGCTTC GAGAAGAAAA TGAATGGTGT CTCTCGTCAT 
    CTTCGAGCTT CTTCACTTCT TTCATTAATT CGCAGCTATG GTGGAATCAA 
    TTCGGTCTGT CGATTTTCGT CTCAATCTGA TGGCTTCTCT GGAGGGAGAT 
    TCAGAGAGCA AGTGCCAGTT TCTGGAGAGT CTGCAAATAA TTCAGGCTTA 
    TCAAACACGG GAAGAATCGG TTCCTCTCCG GAGCCTAATC CTTCGACTTT 
    GAGAACTTTT GGTGATATGA AAGCAGGCTT GTTAAACAGA GGAGTCAATG 
    GTTTCTCGGC TCCTAATGCT CCTCCTACCT TCAAAAGTTC ACTGAGATCA 
    AGATTACCAA ACTCTCTACC TGATCAGTTC GGTCAGACGA ATCCAGGCTT 
    ACCAAACACG GGAGGAAGCG GATTCTCTGC TCCAAGTTTA TCAAGCTACG 
    AGAATTTCAC TCAATCTTCT TCGCTTCTTA AGGAGAATTC CCGCAGTGGA 
    GGGAAGTCAA GCGACCTGGA TTTTGTTAGA GAAGTAATAG AAGATGAAGG 
    AAGGAGAACC GCAGGGATAT TCTCTCATTT CCAACGCCCA AACCTCGAAA 
    CGAATGCTGA CATCATTCAC ATCAAGATGT TGAGGAACAA CACTTTTGTC 
    ACGGTTACAG ATTCCAAAGG AAACGTCAAA TGCAAAGCTA CATCTGGTAG 
    TTTACCCGAT CTGAAAGGTG GAAGGAAGAT GACGAATTAC ACAGCTGATG 
    CAACCGCTGA AAACATTGGG AGAAGAGCTA AGGCTATGGG GCTGAAATCT 
    GTGGTGGTTA AGGTGAACGG ATTTACGCAT TTCGGAAAGA AGAAGAAAGC 
    TATTATCGCG TTTAGAGACG GTTTCACCAA CTCGAGGTCT GATCAGAATC 
    CGATAGTCTA CATCGAGGAC ACTACTAGGA AAGCTCATAA TGGTTGCAGA 
    TTACCAAGGA AACGTCGGGT GTGAAAAGAA AACGTCCCAT GTCGTCGTCT 
    CTTGTTATTC TATGGTCACT ATAGAAACCA TTTGTTTTGG CAAGTTATAT 
    CTTTTCTTGG TTATGTTTTC TCCTTCAAAT CCGAGGAAAA TCGGGTTTAG 
    ATAATTGGAC CAAAGCGATT TGATTAATAA ACCGGAATTG TTTTCCAAAA 
    AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT1G31817.1 [+] show detail - Ribosomal L18p/L5e family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Ribosomal protein S11 1.1e-24
    HMMPanther gb def: Putative 30S ribosomal protein S11 1.6e-98
    HMMPanther Ribosomal protein S11 1.6e-98
    HMMPfam Ribosomal protein S11 2.3e-19
    superfamily Translational machinery components 1.8e-29

    See the detailed result >

    AT1G31817.1

    Model type
    Protein coding
    Short Description
    Ribosomal L18p/L5e family protein
    Computational Description
    NUCLEAR FUSION DEFECTIVE 3 (NFD3); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971); BEST Arabidopsis thaliana protein match is: ribosomal protein S11 (TAIR:ATCG00750.1); Has 7495 Blast hits to 7495 proteins in 2576 species: Archae - 12; Bacteria - 4865; Metazoa - 67; Fungi - 4; Plants - 661; Viruses - 0; Other Eukaryotes - 1886 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR