F14349

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14349

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14349

Determination of introduced cDNA(s)

  • RAFL09-83-C08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-83-C08 - Resource: pda08893

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-83-C08 - full reading
    TNTTCGACAC TTTTCACTGA TCTATTCACT CACTCAAATC GCCGCCGGAG 
    CTAAATCAAT CAACAATGAC GTCGACCTAC ACGAGATTCG ATACCGTATT
    TCTCTTTTCT AGGTTCGCCG GCGCTAAGTA TTCGCCGTTA TTGCCGTCTC
    CGTCGTTTAC TTTATCTACT TCCGGCATTC ATATCAGAAC CAAACCGAAT
    TCTCGTTTTC ACTCGATTAT AGCATCCTCC TCATCTTCAT CTGTAGTCGC
    CGGAACTGAT AGCATTGAGA TTAAATCGTT GCCGACGAAG CCTATTGAAG
    GACAAAAGAC TGGAACTAGC GGACTCCGGA AGAAGGTGAA AGTTTTCATG
    GAAGATAATT ATTTAGCCAA CTGGATTCAG GCATTGTTTA ATTCATTGCC
    ACTTGAGGAT TATAAGAATG CAACGTTGGT TTTAGGAGGT GATGGTCGTT
    ACTTTAACAA AGAAGCTTCA CAGATCATTA TCAAAATTGC TGCTGGGAAT
    GGAGTTGGAC AAATTTTAGT TGGAAAGGAA GGCATTTTGT CAACCCCAGC
    GGTTTCCGCT GTAATCAGGA AAAGAAAGGC AAATGGAGGA TTCATTATGA
    GTGCAAGCCA TAATCCTGGT GGACCTGAAT ATGACTGGGG TATCAAGTTC
    AATTACAGCA GTGGTCAGCC TGCTCCTGAA ACCATTACTG ACAAAATATA
    TGGAAATACA CTTTCAATCT CTGAGATTAA GGTGGCAGAG ATTCCTGATA
    TTGATCTTTC TCAAGTTGGA GTGACCAAAT ATGGGAATTT CAGTGTAGAA
    GTTATAGATC CTGTTTCCGA CTATTTGGAG CTCATGGAGG ATGTTTTCGA
    CTTTGATCTC ATCAGAGGTC TTCTTTCAAG ATCAGATTTT GGGTTCATGT
    TTGATGCCAT GCATGCTGTT ACTGGTGCTT ATGCGAAACC AATTTTTGTC
    GACAATCTTG GAGCCAAACC GGATTCAATT TCCAACGGAG TTCCCCTGGA
    AGATTTTGGG CATGGCCATC CTGATCCTAA TTTGACATAT GCAAAGGATT
    TGGTTGATGT CATGTATCGT GACAATGGAC CGGATTTCGG AGCAGCAAGT
    GATGGTGATG GTGACAGAAA TATGGTTTTA GGAAACAAAT TCTTTGTCAC
    TCCTTCAGAC TCTGTAGCTA TCATCGCAGC CAATGCACAA GAAGCAATTC
    CATATTTCCG TGCTGGTCCT AAGGGGCTGG CACGTTCTAT GCCGACAAGT
    GGTGCTCTTG ATCGTGTTGC CGAGAAGTTG AAGCTTCCTT TCTTCGAGGT
    TCCCACTGGA TGGAAATTTT TTGGAAATCT TATGGATGCT GGAAAATTGT
    CAATCTGTGG AGAAGAGAGC TTTGGCACAG GTTCTGATCA CATCCGTGAG
    AAGGATGGAA TATGGGCTGT GTTGGCGTGG CTTTCGATCC TTGCTCATCG
    CAACAAGGAC ACGAAACCAG GGGACAAGTT GGTGTCTGTT GCAGATGTTG
    TGAAAGAGTA TTGGGCGACA TACGGAAGGA ACTTTTTTTC AAGATACGAC
    TATGAAGAAT GTGAATCTGA AGGAGCCAAT AAAATGATCG AGTATCTTAG
    AGAAATCTTG TCTAAGAGCA AGGCCGGTGA CGTTTATGGA AACTATGTCC
    TCCAGTTTGC AGATGACTTC TCATACACAG ACCCTGTTGA TGGAAGTGTT
    GCATCCAAGC AAGGTGTTCG GTTTGTGTTC ACGGATGGAT CCAGAATCAT
    ATTTCGTTTA TCCGGAACTG GCTCAGCTGG AGCTACAGTG CGAATATACA
    TTGAACAATT TGAGCCAGAC GTTTCAAAAC ATGATGTGGA TGCACAAATA
    GCTCTTAAAC CTTTAATCGA TCTTGCATTG TCTGTATCAA AGCTGAAGGA
    CTTCACAGGG AGGGAGAAGC CCACTGTCAT TACATGAAGA GAAGTGTCAC
    ATGGTCCTTT CGATAAGGCA ATTTGGGTTC CTGACTTCAG TTTTGTCTGC
    CATGTTTATT TGAAAATTCC AGAGCAATGA AATGCTTATC CTTGTAACAT
    ATATAACTTA TATACGTCTT TCTATATAAA TAAAAGCATT TCTTTT

    Gene models with high sequence identity

    1. AT5G51820.1 [+] show detail - phosphoglucomutase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Alpha-D-phosphohexomutase, conserved site 0
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain I 5.6e-35
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain III 8.2e-27
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain II 0.0000000000057
    HMMPfam Alpha-D-phosphohexomutase, C-terminal 0.00000000014
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 3e-56
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 1.5e-39
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 3e-38
    Gene3D no description 3.2e-60
    superfamily Phosphoglucomutase, C-terminal domain 5.2e-53
    superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 4.6e-51
    superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 1.4e-39
    HMMPanther PHOSPHOGLUCOMUTASE 1.1e-215
    HMMPanther PHOSPHOHEXOMUTASE FAMILY MEMBER 1.1e-215
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 5.6e-20
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 5.6e-20
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 5.6e-20
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 5.6e-20

    See the detailed result >

    AT5G51820.1

    Model type
    Protein coding
    Short Description
    phosphoglucomutase
    Curator Summary
    Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts.
    Computational Description
    phosphoglucomutase (PGM); FUNCTIONS IN: phosphoglucomutase activity; INVOLVED IN: response to cold, starch biosynthetic process, detection of gravity, carbohydrate metabolic process; LOCATED IN: apoplast, stromule, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: Phosphoglucomutase/phosphomannomutase family protein (TAIR:AT1G70730.3); Has 12307 Blast hits to 12296 proteins in 2800 species: Archae - 231; Bacteria - 9586; Metazoa - 483; Fungi - 211; Plants - 168; Viruses - 0; Other Eukaryotes - 1628 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR