F14426

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14426

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14426

Determination of introduced cDNA(s)

  • RAFL09-19-B14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-B14 - Resource: pda07998

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-B14 - full reading 
    ACTTGTTTCT CTTCTTCTTC TTTATTGCTT ATAGCTTCTG AGCATCAATG 
    GATCCAAATC ATAATAATCT TCTCATCTTT GTAGCCTTTT TTGTTCTCTG 
    CTTAGCCACC AATGGTGTAA CCGGATATGC CACGGTCACA GGCTCGGTGT 
    TTTGTGACCA ATGCAAGGAT GGAGAGAGAT CTTTGTTTGA TTTTCCTGTC 
    TCTGGAATCA AGATTAGTGT CACATGTGCT GATGAAAATG GACAGGTCTA 
    TATGTCAAGA GAAGAGACTA CTAATTGGCT TGGAGGATAT GTAATGAGAT 
    TTGATGGGAC ACCGGATCTA AGTAACTGTT ATGCTCAAGT TTCAGACAAT 
    GGAGTTCAAC AAGACCCAAG TAGCTGCAGC ATTGCTTCAG GTCCTGCACA 
    GAAACTTAAA CTAATGTTTA GCTTTTTTGG GATTGAAACG TTTGCTGCGG 
    ATGCCCTTCT TGCTCAACCA GTTCAGCCAA GTTCTTTTTG TCCTAAACCA 
    CCCACAGCTC CGGTCATGCC TCCTCCTCAA GTTCCGGTAA TGCCTCCTCC 
    TCAGGTCCCG GTTAAGCCTC ATCCTAAGGT CCCGGTTATA AGTCCTGATC 
    CTCCAGCTAC ATTGCCTCCT CCTAAGGTCC CGGTTATAAG TCCTGATCCT 
    CCAACTACAT TGCCTCCTCC TCTGGTCCCG GTCATAAATC TTCCTCCAGT 
    TACATCACCT CCTCAGTTTA AGCTTCCACC ATTGCCTCAA ATCCCTCCAA 
    TGCCATTTGT AGAGCCATCA GCTTGTTCTC ACCAGTTGTG GATGAAACCT 
    GAGTACAGAT GCTACTGGAG GGCGATAGGT CCAGACACAA AGGTCGCAGT 
    TGCATTTGGG CTAGTAGCCG GGAGAATATA CGGCACAGAT ATGACAGTAC 
    GAGAAGCGCT TGACGGGCGA GGAGAAGCCT ATAAGACACT TCTAAGAGAG 
    GCAACAACTG CATTGCTCAA TTCATACAAC TCTCTAGGAT TTCCTTATAA 
    TTCCGTCGCT GTGATCACAT ATACCAATCT GGCTCTCCTC GGGAATTCGG 
    AACACGATGT CCTCATGACT GCTATTCGTT TCATCAAGGC TAATTCCGGG 
    ACCTGCAGAT TCACAGTCTG CAATTGATTG AATGTGTTTT CAATACTTAT 
    ATACTCTACA CTCTTTCTTT CTCTTTTACA TTGTTCTTGG GTCCTTTTGT 
    AATACTATAA AAGTCTATAC CTGGATTCAT TGGAGAATTT ATGGACTATT 
    ATTGTATCCC TATTTATACT CGG

    Gene models with high sequence identity

    1. AT2G16630.1 [+] show detail - Pollen Ole e 1 allergen and extensin family protein
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pollen Ole e 1 allergen/extensin 3.3e-14
    FPrintScan PRICHEXTENSN 2.6e-10
    FPrintScan PRICHEXTENSN 2.6e-10
    FPrintScan PRICHEXTENSN 2.6e-10
    FPrintScan PRICHEXTENSN 2.6e-10

    See the detailed result >

    AT2G16630.1

    Model type
    Protein coding
    Short Description
    Pollen Ole e 1 allergen and extensin family protein
    Computational Description
    Pollen Ole e 1 allergen and extensin family protein; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR