F14447

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14447

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14447

Determination of introduced cDNA(s)

  • RAFL05-16-E05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-E05 - Resource: pda02673

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-E05 - full reading 
    AAAAGTTACA AACGCGACTC TCTGATCCTA AATTTCGTTG TACAGAGAAG 
    AAGCAAAAGA GAGAAACATC TGACCCGGAA TCTGACCTGA AAACCCGGAA 
    GAATCGAAAA ATGGGGAAAG ATGGTCTGAG CGACGATCAG GTCTCGTCGA 
    TGAAGGAAGC CTTCATGCTC TTCGACACCG ATGGCGACGG CAAAATCGCA 
    CCGTCAGAGC TCGGGATCCT CATGCGATCT CTCGGCGGAA ACCCGACCCA 
    AGCCCAGCTG AAATCCATAA TCGCATCCGA GAATCTCTCT TCACCGTTTG 
    ATTTCAACAG ATTCCTCGAT CTCATGGCGA AACATCTGAA GACGGAACCT 
    TTCGATCGCC AGCTCCGTGA CGCATTCAAA GTGCTCGATA AGGAAGGTAC 
    CGGGTTCGTT GCTGTGGCGG ATCTGAGGCA TATTCTGACC AGTATCGGAG 
    AGAAGCTGGA GCCTAATGAG TTCGATGAGT GGATCAAGGA GGTGGATGTT 
    GGATCCGATG GAAAGATCCG GTATGAAGAT TTCATAGCAA GGATGGTTGC 
    TAAGTGAGAT CTAATCTTTT ATGTTTTGAA AGTTGAAATT TTTAAGAAGA 
    GATTCTTTGT GTTTTTTTCA CTTGTTTGTT TGATTTCGAG CGAATCCTAG 
    CTAGGGTTTG TTTTATCATT GTGGAATTTG CTTACTAACT TTGTCTTCTT 
    CATGTTTGTT TTCATTTTTA ATGGAAATGT TGTCTGTGTG C

    Gene models with high sequence identity

    1. AT1G12310.1 [+] show detail - Calcium-binding EF-hand family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan EF-Hand 1, calcium-binding site 0
    Gene3D EF-hand-like domain 4e-34
    HMMSmart Calcium-binding EF-hand 2.7e-05
    HMMSmart Calcium-binding EF-hand 0.11
    HMMSmart Calcium-binding EF-hand 0.089
    ProfileScan EF-HAND 2 13.453
    ProfileScan EF-HAND 2 10.58
    ProfileScan EF-HAND 2 9.436
    HMMPanther CALMODULIN 1.2e-81
    HMMPanther CALMODULIN 1.2e-81
    superfamily EF-hand 7.3e-40
    HMMPfam EF-hand 1.3e-06

    See the detailed result >

    AT1G12310.1

    Model type
    Protein coding
    Short Description
    Calcium-binding EF-hand family protein
    Computational Description
    Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G62820.1); Has 15156 Blast hits to 13043 proteins in 1439 species: Archae - 0; Bacteria - 35; Metazoa - 6065; Fungi - 3861; Plants - 3197; Viruses - 0; Other Eukaryotes - 1998 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR