F14518

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14518

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14518

Determination of introduced cDNA(s)

  • RAFL05-18-O03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-O03 - Resource: pda01315

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-18-O03 - full reading
    CTCTTCCTCT CTTCTCTCTC AAATCTAGAA AGAGAAAAAG TCTTAAATTT 
    GTCTCATTTA TGCGATAAGA ACCACAATTC CTCTATCAAA ATCTCTCTCT
    CTGACATACC CAGTTGGAAA AATTCAATCT TTTATCCCTA AGATTCGATC
    TTTCTTCTTG GGAAGTTGAT AAATGTTCAA GGAAACATAA AAAAGAGAAG
    ATTTTTGAAT AAAGGTTGAA GAAAAATGCA GGATCCAGCA GCATATTACC
    AGACGATGAT GGCGAAGCAA CAACAACAAC AACAACCACA GTTTGCAGAG
    CAAGAACAGT TAAAGTGTCC TCGTTGTGAC TCACCAAACA CTAAATTCTG
    TTACTACAAC AACTACAATC TCTCACAGCC TCGTCACTTT TGCAAAAGCT
    GTCGTCGTTA CTGGACTAAA GGCGGCGCTC TCCGTAACGT TCCCGTCGGT
    GGTGGTTCTC GTAAGAACGC AACCAAACGA TCCACTTCTT CTTCTTCTTC
    TGCTTCCTCT CCTACCAACA GTAGCCAAAA CAAGAAGACG AAAAACCCGG
    ATCCGGATCC TGATCCACGT AATTCTCAAA AACCGGATTT GGATCCGACC
    CGGATGCTTT ACGGGTTTCC GATCGGTGAC CAAGACGTGA AGGGTATGGA
    GATTGGTGGA AGCTTTAGCT CGTTGTTGGC GAATAATATG CAGCTTGGTC
    TTGGAGGAGG AGGGATCATG CTTGACGGGT CGGGTTGGGA TCATCCGGGT
    ATGGGTTTGG GTTTGAGGAG AACCGAACCG GGTAATAATA ATAATAACCC
    ATGGACCGAT CTGGCTATGA ACAGAGCGGA GAAAAACTGA AGAAGAAAAG
    AAGAGAGGGG TATTTTGGTA AATTATAGCA AACTGATTTT GGGTGACTTG
    AGCCATCACG TAGACACTGA ACAGTTTCGA TCATGTTTAT GTCATTTTGG
    TAATATTATT ATTATTCCTC CTCCTACTTT ATTTCTATTT ATATAATCGG
    TTTTGTCGTA ATTTTAATCC TGTGTAATAG AAAGAAATTT CTCTAAAAAA
    AAAAAAAAAA

    Gene models with high sequence identity

    1. AT3G21270.1 [+] show detail - DOF zinc finger protein 2
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, Dof-type 29.255
    HMMPfam Zinc finger, Dof-type 2.4e-37
    PatternScan Zinc finger, Dof-type 0
    BlastProDom Zinc finger, Dof-type 2e-23

    See the detailed result >

    AT3G21270.1

    Model type
    Protein coding
    Short Description
    DOF zinc finger protein 2
    Curator Summary
    Encodes Dof zinc finger protein adof2.
    Computational Description
    DOF zinc finger protein 2 (DOF2); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DOF zinc finger protein 1 (TAIR:AT1G51700.1); Has 1111 Blast hits to 1102 proteins in 62 species: Archae - 0; Bacteria - 5; Metazoa - 2; Fungi - 4; Plants - 1092; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR