F14526

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14526

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14526

Determination of introduced cDNA(s)

  • RAFL09-13-F03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-13-F03 - Resource: pda01618

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-13-F03 - full reading 
    ACACATTCTT CTTCAACTAC AAAACAAAAA CACTACTACA CATTCTTTCC 
    TCTTGTTCAT TTCAAACCCA AAAATCAAAG TTCGAAGTTG AAAGAAGACA 
    TGGTTTTGTC TAAGACAGTT TCCGAATCTG ATGTCTCAAT CCATTCAACT 
    TTTGCTTCTC GTTACGTCCG CAACTCTCTT CCACGATTCG AAATGCCTGA 
    GAACTCAATC CCAAAAGAAG CAGCTTACCA AATCATCAAC GACGAGCTAA 
    TGCTCGATGG TAACCCAAGG CTGAACCTAG CTTCCTTCGT GACCACATGG 
    ATGGAGCCAG AATGTGACAA GCTCATGATG GAGTCCATCA ACAAGAACTA 
    CGTCGACATG GACGAGTACC CTGTCACCAC TGAGCTTCAG AACCGATGTG 
    TTAACATGAT AGCACGTCTC TTCAACGCGC CGCTTGGTGA CGGTGAAGCT 
    GCCGTTGGTG TTGGCACCGT CGGATCGTCG GAGGCGATTA TGTTGGCCGG 
    TTTGGCTTTT AAGAGACAAT GGCAGAATAA GCGTAAGGCC CAAGGGCTTC 
    CTTATGATAA GCCCAATATC GTAACCGGTG CTAATGTCCA GGTTTGCTGG 
    GAGAAATTCG CAAGGTATTT CGAAGTGGAG CTTAAGGAAG TGAACCTAAG 
    AGAAGACTAT TACGTGATGG ACCCTGTAAA GGCGGTCGAA ATGGTAGACG 
    AAAACACAAT TTGTGTCGCT GCCATCCTCG GTTCAACGTT AACCGGTGAA 
    TTCGAAGACG TTAAGCTCCT CAACGACCTC CTTGTCGAGA AAAACAAGCA 
    AACCGGATGG GACACGCCAA TACACGTGGA CGCAGCGAGT GGTGGGTTTA 
    TTGCTCCGTT CTTGTATCCG GAGCTGGAGT GGGATTTCCG GCTACCGTTG 
    GTTAAGAGTA TTAATGTGAG TGGTCACAAA TACGGTTTGG TTTACGCCGG 
    TATTGGTTGG GTTGTATGGA GAACCAAAAC CGATTTGCCT GATGAACTTA 
    TCTTCCATAT CAATTATCTT GGCGCTGATC AACCAACCTT TACACTCAAC 
    TTCTCCAAAG GTTCAAGTCA AGTGATTGCT CAGTACTACC AGCTGATTCG 
    TCTTGGATTC GAGGGTTATC GCAATGTGAT GGATAATTGT CGGGAAAACA 
    TGATGGTACT AAGACAAGGA TTAGAGAAAA CGGGACGTTT TAAAATCGTC 
    TCCAAAGAAA ACGGTGTTCC GTTAGTGGCG TTTTCTCTCA AAGATAGTAG 
    CCGCCACAAC GAGTTCGAGG TGGCCCATAC ACTCCGTCGC TTCGGCTGGA 
    TCGTTCCGGC CTACACGATG CCTGCGGATG CGCAGCATGT CACTGTCCTT 
    CGAGTTGTTA TCCGAGAAGA TTTCTCTCGA ACCTTAGCCG AGAGATTGGT 
    AGCTGATTTC GAGAAGGTTC TACACGAGCT CGATACGCTT CCGGCGAGGG 
    TTCACGCCAA GATGGCTAAT GGAAAAGTTA ACGGTGTTAA GAAGACGCCA 
    GAGGAGACGC AGAGAGAAGT CACGGCCTAC TGGAAGAAGT TGTTGGAGAC 
    TAAGAAGACC AACAAGAACA CAATTTGCTA ATAAGATTAT TTTATAAACT 
    AATATTATTA TTTGTTTTGT CCTTAATTGC GCTCCATAAT TATGGACCTT 
    TTTCTTTCTT TGCTGTTTGG ATTATTTTTT GTTTTTCTTT TTGTTAAGTT 
    TTGGGATTTG ATATTGCTGA TGGAGAGTGA TTTTTAATGG ATATACACTA 
    AATCAATGAA AAATATATAT ATATATATTT TTGTGGGTAT GC

    Gene models with high sequence identity

    1. AT2G02010.1 [+] show detail - glutamate decarboxylase 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Glutamate decarboxylase 0
    HMMPfam Pyridoxal phosphate-dependent decarboxylase 4.3e-102
    superfamily Pyridoxal phosphate-dependent transferase, major domain 3.1e-130
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 1.2e-29
    HMMPanther Glutamate decarboxylase 3.5e-239
    HMMPanther Pyridoxal phosphate-dependent decarboxylase 3.5e-239

    See the detailed result >

    AT2G02010.1

    Model type
    Protein coding
    Short Description
    glutamate decarboxylase 4
    Computational Description
    glutamate decarboxylase 4 (GAD4); FUNCTIONS IN: calmodulin binding; INVOLVED IN: carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 3 (TAIR:AT2G02000.1); Has 2849 Blast hits to 2845 proteins in 876 species: Archae - 190; Bacteria - 1701; Metazoa - 147; Fungi - 354; Plants - 286; Viruses - 3; Other Eukaryotes - 168 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR