F14535

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14535

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14535

Determination of introduced cDNA(s)

  • RAFL09-65-M10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-65-M10 - Resource: pda09883

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-65-M10 - full reading 
    ATGATCGCTT TCGTTATATT CATTCTCTCT TTTCTCTTTC CATTTTGGCT 
    CCCACCGACG TCATCAATCT CTACCGGAGA CTTCCGCCGA TTCTCACACC 
    GTTCTTCTTC TCTCCTTCCG ATTCCGGATT CCAATTTCGT TCCTTTTTTG 
    TTTTCTCTCA AAACCCCTAA ATTTTCTTCC TTTCTTCGAT CTGGATTTTT 
    TGTGTTCCCC AAATTTCAAG ACTTTGATCT GATTCCTTCT AAGATTTCTC 
    CAAAGCAAAG ATCTTTTTTT TGTTTTTTGG GATCTCTGTA TTGTTGATGG 
    GCACAACTAG GGTCTGCTCG GAGGTTTCTT CTGGATCTTC GAAATCGCTT 
    AGCCAATCTC TCACGGTATC GACCTCTACC ACAGAAACAG TCAATGGTTT 
    CCATGAATTC AAGATCTGTG GGTACTCTCT CGCTAAAGGT GTTGGTGTCG 
    GCAAATACGT CGCTTCCGAT ACGTTTATGG TCGGTGGTTA CTCGTGGGCA 
    ATCTACTTTT ATCCAGATGG GAAGAGTCCG GAGGATAACT CGTCTTACGT 
    TTCTTTGTTC ATAGCTCTTG CTAGCGAAGG AGCTGATGTT AGGGCTTTGT 
    TTGAGCTCAC GCTTGTGGAT CAGAGTGGTA ATGGGAAGCA TAAGGTTCAT 
    AGCCATTTTG GTAGAGCTCT CGATAGCGGT CCCTATACTC TCAAGTATCG 
    TGGAAGCATG TGGGGATACA AGCGGTTTTT CAGGAGGTCC AGTCTAGAAT 
    CGTCGGATTA TTTGAAGGAG AATAGTCTCT TGGTTAGGTG CCGTGTGGGT 
    GTGGTGAAGT CAGTTACGGA GGGACCGAGG TATTACAATA TCCCTGTGCC 
    AGTTTCTAAC TTGGGACAAC AGTTGGGAAA TTTATTGGAG AGTGGGAAAG 
    GCTGTGATGT TGTTTTCCAA GTTGATGGAG AAACCTTCAA CGCACACAAA 
    TTGGTTCTTG CAACGCGTTC CCCGGTTTTC AACGCACAGC TTTTTGGCCC 
    TTTAGGAGAC CGAAATACCA AATGCATAAC GATAGAAGAC ATGGAAGCAC 
    CCATTTTCAA GGTATTGCTC CATTTTATCT ACTGGGACGA ATTGCCTGAT 
    ATGCAAGAGT TAATAGGAAC AGACTCTACA TTGGCGTCTA CTCTTGTGGC 
    TCAGCATCTA CTAGCAGCGG CAGACCGTTA TGCTCTTGAG CGGCTTAAAG 
    CAATCTGTGA GTCAAAACTC TGTGAAGGGG TTGCCATAAA CACGGTTGCA 
    ACTACTTTGG CCCTAGCAGA GCAGCATCAT TGTTTGCAGC TAAAAGCAGT 
    GTGTCTCAAA TTCGTGGCAC TGCCAGAGAA CCTGAAAGCT GTGATGCAAA 
    CAGATGGGTT TGATTATCTG AAAGAGAGTT GCCCATCTTT ACTAACGGAG 
    CTATTGCAGT ATGTGGCGAG GCTAAGTGAA CACTCTGTTA TAGTATCTGG 
    ACATCGAAAA GAAATATTTG CCGATGGTTG TGACGCGAGT GGAAGACGAG 
    TGAAGCCCCG GTTGCACTGA ATGGGAGAGA AAGAAGAAAG ATTTGTGCAT 
    TGTATAATCT CTGTTATGGA TAATGGCTGA TCTAATCGGA TCTAGCAAGT 
    ACAATGAATC GTTTTCAACG CGTTTTCTCA TAAATCAAAG ATCCAATGAA 
    ATTTGGGGTT A

    Gene models with high sequence identity

    1. AT5G19000.1 [+] show detail - BTB-POZ and MATH domain 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan BTB/POZ-like 17.314
    ProfileScan MATH 22.769
    HMMPfam BTB/POZ 1.1e-24
    HMMPfam MATH 0.0000026
    superfamily TRAF-like 9.5e-38
    superfamily BTB/POZ fold 3.2e-31
    Gene3D TRAF-type 0.00000037
    Gene3D BTB/POZ fold 2.2e-27
    HMMSmart MATH 0.000000000028
    HMMSmart BTB/POZ-like 5e-25
    HMMPanther BTB-RELATED 3.1e-88
    HMMPanther Kelch related 3.1e-88

    See the detailed result >

    AT5G19000.1

    Model type
    Protein coding
    Short Description
    BTB-POZ and MATH domain 1
    Computational Description
    BTB-POZ and MATH domain 1 (BPM1); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 2 (TAIR:AT3G06190.1); Has 5705 Blast hits to 5596 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 3900; Fungi - 59; Plants - 1504; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR