F14539

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14539

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14539

Determination of introduced cDNA(s)

  • RAFL02-10-L11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-10-L11 - Resource: pda00168

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-10-L11 - full reading 
    ACCAAACAGC AAAACAAGAA GAACAACAAC ACTAAGCAAA AAAGAAAAGC 
    TCAAGCCGAG AGAGACAATG GCATCAACAT TCACGAGCTC AAGCAGTGTT 
    CTTACCCCAA CAACATTCCT TGGCCAGACT AAAGCCTCAA GCTTTAACCC 
    CCTTCGTGAT GTTGTCTCTC TCGGATCTCC CAAGTACACT ATGGGAAATG 
    ATCTTTGGTA TGGACCTGAC AGAGTGAAGT ACTTAGGACC CTTTTCCGTT 
    CAAACTCCGT CTTACCTCAC CGGAGAATTC CCTGGCGATT ATGGTTGGGA 
    CACCGCCGGT TTATCCGCAG ACCCTGAAGC CTTTGCCAAA AACAGAGCTC 
    TTGAGGTGAT CCATGGGAGA TGGGCAATGT TGGGAGCTTT TGGTTGCATA 
    ACCCCTGAAG TTCTTCAAAA GTGGGTCCGT GTGGACTTCA AAGAACCAGT 
    CTGGTTCAAA GCCGGTTCAC AAATCTTCTC CGAAGGCGGT TTGGACTACT 
    TAGGCAACCC AAACCTAGTC CATGCTCAGA GCATTTTAGC CGTCCTTGGC 
    TTCCAAGTCA TCCTCATGGG TTTGGTTGAA GGTTTCCGCA TCAACGGTCT 
    TGATGGTGTT GGCGAAGGCA ACGACTTGTA CCCCGGTGGG CAATACTTTG 
    ACCCGTTGGG TCTCGCTGAT GATCCAGTTA CTTTTGCTGA GCTTAAGGTG 
    AAAGAGATCA AGAACGGAAG ATTGGCTATG TTCTCTATGT TTGGCTTCTT 
    TGTTCAAGCC ATTGTTACTG GAAAAGGTCC TTTGGAGAAT CTCCTTGACC 
    ATCTTGACAA CCCTGTTGCT AACAATGCGT GGGCTTTCGC AACTAAGTTT 
    GCACCTGGAG CTTAAATTTT CAAGTCTTGA TGTGATTCTT GTAATGATAT 
    GAACATAACC TTTCTTGTTC CTCTCAAATT ACAAATCTTC TATTTGCTAT 
    GC

    Gene models with high sequence identity

    1. AT5G54270.1 [+] show detail - light-harvesting chlorophyll B-binding protein 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Chlorophyll A-B binding protein 2.4e-159
    superfamily Chlorophyll a-b binding protein 8.4e-77
    HMMPfam Chloroa_b-bind 3.9e-49

    See the detailed result >

    AT5G54270.1

    Model type
    Protein coding
    Short Description
    light-harvesting chlorophyll B-binding protein 3
    Curator Summary
    Lhcb3 protein is a component of the main light harvesting chlorophyll a/b-protein complex of Photosystem II (LHC II).
    Computational Description
    light-harvesting chlorophyll B-binding protein 3 (LHCB3); FUNCTIONS IN: structural molecule activity; INVOLVED IN: photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR