F14543

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14543

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14543

Determination of introduced cDNA(s)

  • RAFL05-18-N22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-N22 - Resource: pda17128

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-18-N22 - full reading 
    GAAAACAAAA AAAAATGGCT TCCACTGCTC TCTCAAGCGC CATCGTCGGA 
    ACTTCATTCA TCCGTCGTTC CCCAGCTCCA ATCAGTCTCC GTTCCCTTCC 
    ATCAGCCAAC ACACAATCCC TCTTCGGTCT CAAATCAGGC ACCGCTCGTG 
    GTGGACGTGT CACAGCCATG GCTACATACA AGGTCAAGTT CATCACACCA 
    GAAGGTGAGC TAGAGGTTGA GTGTGACGAC GACGTCTACG TTCTTGATGC 
    TGCTGAGGAA GCTGGAATCG ATTTGCCTTA CTCTTGCCGT GCTGGTTCTT 
    GTTCGAGCTG TGCTGGTAAA GTTGTGTCTG GATCTGTTGA TCAGTCTGAC 
    CAGAGTTTCC TTGATGATGA ACAGATTGGT GAAGGGTTTG TTCTCACTTG 
    TGCTGCTTAC CCTACCTCTG ATGTTACCAT TGAAACCCAC AAAGAAGAAG 
    ACATTGTTTA AGCCTCACCT ACTCACCAGC TTTTGATGGT TTAAAAATCA 
    TGTCTTTATA AATTTCACAT TTTGGGTTGA GTTTGTTGTT ACTAAAAACT 
    ATTGTTATCT GTTGTTATTG TTCCTGGTTT GGCTCACCAT CAATCGATGA 
    CATTTTAAAC CAAAAAAAAA A

    Gene models with high sequence identity

    1. AT1G60950.1 [+] show detail - 2Fe-2S ferredoxin-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ferredoxin [2Fe-2S], plant 6.3e-58
    HMMPfam Ferredoxin 1.5e-20
    Gene3D Beta-grasp fold, ferredoxin-type 4.6e-31
    PatternScan 2Fe-2S ferredoxin, iron-sulphur binding site 0
    superfamily Ferredoxin 4.5e-32
    ProfileScan Ferredoxin 13.455

    See the detailed result >

    AT1G60950.1

    Model type
    Protein coding
    Short Description
    2Fe-2S ferredoxin-like superfamily protein
    Curator Summary
    encodes a major leaf ferredoxin
    Computational Description
    FED A; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: photosynthetic electron transport chain, response to light stimulus; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), Ferredoxin (InterPro:IPR001041), Ferredoxin [2Fe-2S], plant (InterPro:IPR010241), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: ferredoxin 1 (TAIR:AT1G10960.1); Has 7652 Blast hits to 7650 proteins in 1365 species: Archae - 135; Bacteria - 5670; Metazoa - 7; Fungi - 12; Plants - 625; Viruses - 5; Other Eukaryotes - 1198 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR