F14548

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14548

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14548

Determination of introduced cDNA(s)

  • RAFL09-22-A19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-22-A19 - Resource: pda08034

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-22-A19 - full reading
    TAGACTGAGT CTGGTTACTT GAAGGGGATC ATGTGAATAC GTCGACTGGT 
    AAAGAAAGAA AGATTGCTGC TTTTTAGATT TAGATTCGAG AATGTATGGA
    AGATCTGGTC TTGACAGGTT TAAGAAGTCC CAAACTTCGG AACCCTTCTC
    TGTATCAGCA AATCCTCCTC CGGTGGTACA ACAACATCTG TCTCCGGAGG
    CATTGTCGGG GCAAAAAACT CAGATTGGAG CTGGTCAATC AAACTGGCAT
    CCCCCTGATT GGGCGATTGA GCCTCGTGCC GGTGTCTACT CTCTGGAAGT
    TGTGAAAGAC GGCCAGATCC TTGATCGGAT TCATCTAGAT AGACGAAGGC
    ATATCTTCGG GAGACAACAT CAGACTTGTG ATTTTGTCCT TGATCATCAG
    TCTGTTTCCC GCCAGCATGC CGCAGTTGTT CCTCACAAGA ATGGCAGCAT
    CTTTGTGATT GACTTGGGAT CAGCTCATGG TACGTTTGTT GCAAATGAGA
    GGTTGACTAA AGATACTCCT GTAGAGCTTG AAGTGGGTCA ATCCTTACGA
    TTTGCTGCCT CCACAAGAAT CTACCTTCTG AGAAAGAACA GTGAGGCTCT
    CTTTTCTCGC CCTCCACCTC CAGCTGAGAT TAAGCTTCCT CCACCTCCTG
    ATGCTTCTGA TGAGGAAGCT GTTGTTGCTT ACAATACCTT GCTGAATCGA
    TATGGTTTAA GCAATGGAGA ATCTGGTGGT ATGTTAGGGA AAAGGAAAGA
    GAAGACCGGA TCAGAAGCGG GAGTGGCTAA GAGGATGAAG AAAGTGAGAG
    TGAGCTTCAG GGATCAACTA GGAGGAGAGC TGGCTGAGAT TGTTGGCATG
    TCTGATGGAG CAGACGTGGA AACAGAGCCT GGTCCTATAA ATGTCAAAGA
    AGGAAGCCTC GTTGGGAAAT ATGAATCACT GGTGCGAGTG ACACTCATAC
    CCAAAGGCAA AGTGAAGGAA GAGAAAGCCT TTACAGGAGG AACAAGAGGA
    GGTGTAACAG ATCGACTCCA GGAAGCTATG AATATGTTGA AACGGGGTCC
    AAAAACAGGG ATTTACGATG ACCTTTACGG TGGTGACTCA CTTGCCAAGG
    CTGTTGGTAC GTCATGGGCT TCTGTGAGTC AACCAGCAGC TGAAACTGAA
    TGTGGAGGGG TTGGTGAAGA AGATGATAAC GACGATCTGT TTGGTGACTA
    ACTGATTTTG AACACTGAGA TTCCTTTAAG TAACTCTTCT TCTTCTCTAA
    TGCCTACATT CCATTCCAAA GGCATTGGTA TGTTGTTTCC TCTTTGTCTA
    TCCAATGGCT GCAGCAAGAA AAGAGAGCAG CTCTAAGCCC AGGCCCATTG
    TCTTGTGTTA TAAGTAAGAA CCCTGAAATT TGATATGAGC TTGAGCCTGG
    TCAGTGGTCA TTCTAGTTGT GGGTCTTAAC AGGAGATGCA TTACATAGAT
    AGTCATTACA AATAGTGTGG AGAGTAGAGA GTAGGGCCAA TGCAAATGGA
    GTGCATTTGA TTAGACCACT ACTGACTTAC AGATTCTCTC CTCAAGGCAG
    ACCAATTCCA TCAGAAGAGG ACATTTGTAC TCAAATACCT CTCCTCTCAT
    TCTTTTTCAC TTTTGCCTTT TTGCATTATT AAAACAGCAC ACTAATGATG
    TGGGTTGACT TCCCTCTCCC CCACAAAAAC AGAGATTCCA TGTGGGGGGA
    AATGGACAAC AAGTAAAACA CTTGTAAAAA TGGTAATCTG CCTCTGATGC
    TTTAAGATAT GATTTGGGGA TCAATGCATC TTTGCTTTGG GATTTGCTTT
    GTGACAGTTA GTATAAAGAA GAGAGAAGCT GAATGTGCTG CAACCAAATT
    AAAACTCTCT TTTGAGTTAA GCCTATATCC AACTCCTACT CTTCCTAGTG
    TGGTCCATTG TATTTATCAT AAGAGTAAAC TCGCTTGTAA TAAATTATAG
    TAGGGAAAGG TGGAAGACCC ACTTTTGTTT CTC

    Gene models with high sequence identity

    1. AT5G47790.1 [+] show detail - SMAD/FHA domain-containing protein
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SMAD/FHA domain 1.8e-28
    Gene3D Forkhead-associated (FHA) domain 8e-20
    ProfileScan Forkhead-associated (FHA) domain 13.114
    HMMSmart Forkhead-associated (FHA) domain 6.9e-14
    HMMPanther NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 7.7e-116
    HMMPanther NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 7.7e-116
    HMMPfam Forkhead-associated (FHA) domain 7e-18

    See the detailed result >

    AT5G47790.1

    Model type
    Protein coding
    Short Description
    SMAD/FHA domain-containing protein
    Computational Description
    SMAD/FHA domain-containing protein ; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: SMAD/FHA domain-containing protein (TAIR:AT5G38840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR