F14636

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14636

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14636

Determination of introduced cDNA(s)

  • RAFL14-51-G10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-51-G10 - Resource: pda18676

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-51-G10 - full reading
    AGTAAAACCC TCATTTCTGT TTCTCTTTTC ACTTTTAAGG AAAACCCTAG 
    AATCCTCAGA AATGGCGTTG AGCACCGTGT TTCGTCGAGC TTCGTCAACA
    GTAGCCAATC TTGCTTTCCG TGCGGGTAGA TCTCCGGTTA GCTTCCGCAG
    TGGCGCTGTC TCCGTCGAGA GGCTGATTCG TGGTAGCCAC CAGATCAGGC
    GTGGATCGGT TAGTTCATTC TCAGTCTCGA GCTTTTCGAC GGAAAGTGCG
    ATCTCTAAAA CAACCGCCGA CGAGAATCTT GTTAGCGTTA TCGAATCTGA
    AATCGAATGC GCCGTCGCAG AGGAGGCTCC TCATGACACT GACTTCTTGG
    AAGATAAGCC AGAAGGGTTT CCATTTGAAA TCATTGATAA TTCAGGGGAG
    AGAACTGTGT TGCTGACAAG GAAATTTGAG GATGAAACCA TCCAAGTGGA
    AGTTGACTCT GTTGCTTCTT ATGATGATGA AGATGAAGAA GAGGAAGCAG
    AACCAAACAA TGAAGAAGAC GATGAAGATC AAGAGAGCTC GGGTAAAGTC
    CGGGTTCCGA TGGTTGTTAG TGTGCAGAAA GGTGATGGTG TGTGTCTTGA
    GTTTGGAGTC AGCGCATACC CGGATGAGAT TGTGATTGAT AGTTTATCGA
    TCAAACAACC GCAAGGATCT GATAATGACC TTGCTTACGA AGGACCTGAC
    TTTGATGACT TGGATGAGAA TTTGCAGAAG GCTTTCCACA GGTACTTGGA
    GATCAGAGGT ATTAAACCAA GCTTCACTAC CTTTCTGGCA GATTATGTGG
    CCAACAAAGA TAGCAGAGAG TATCTTCAAT GGCTCAAGGA TCTCAAGTCT
    TTTGTCGAGA AGTGAAACTG AACTTTGTTC AGAGAATAAG AGCGAGATTT
    CTTTTTGCTT TAAACTTTTG AGTTTATCTT AGATGAACTT GATATCACCA
    TGAGCAATCG TTGAAAGTGA GGTCATGTGT TATGCTTGTT AACAATATTG
    CTACATGTTT TTAATGGGTT TTTAGGTACT TTGCTAGATA TAAGATGCAA
    CTCTTTCGAG TGTCAGTTGG AAAAAATGTT ACGACCTCAA TAAAGTATAA
    TTCTTTTGCA TTTTCCAAAA AAAAAA

    Gene models with high sequence identity

    1. AT5G02050.1 [+] show detail - Mitochondrial glycoprotein family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Mitochondrial glycoprotein 0.0000000000000058
    HMMPfam Mitochondrial glycoprotein 4.3e-30
    superfamily Mitochondrial glycoprotein 5.2e-54

    See the detailed result >

    AT5G02050.1

    Model type
    Protein coding
    Short Description
    Mitochondrial glycoprotein family protein
    Computational Description
    Mitochondrial glycoprotein family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: Mitochondrial glycoprotein family protein (TAIR:AT3G55605.1); Has 498 Blast hits to 497 proteins in 162 species: Archae - 0; Bacteria - 2; Metazoa - 46; Fungi - 134; Plants - 219; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR