F14706

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14706

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14706

Determination of introduced cDNA(s)

  • RAFL04-17-N17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-N17 - Resource: pda00600

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-17-N17 - full reading 
    ACATTTTACA CTCATCTCGT TCTCTCTTCC GTCAATATGG AAGGCGTCAC 
    CGTCGTGTCT TTCTTCCTTC TTTTCATCGC CACCGCCATG GCCGCCAAGT 
    CCACCGTCTC CTTCCGTGAC GGCATGTTAC CAAACGGAGA CTTCGAGCTA 
    GGACCAAAAC CATCAGACAT GAAAGGAACA GAAATACTAA ACAAACTAGC 
    AATACCAAAC TGGGAAGTCA CAGGATTCGT CGAATACATT AAATCAGGAC 
    ATAAACAAGG AGACATGCTT CTCGTTGTTC CCGCCGGTAA ATTCGCTGTA 
    AGACTTGGGA ACGAAGCATC GATCAAACAA AGACTTAAAG TGGTTAAAGG 
    AATGTATTAC TCACTCACTT TTAGTGCTGC TAGAACTTGT GCACAAGACG 
    AGAGACTTAA CATATCTGTA GCACCTGACT CCGGTGTGAT TCCGATTCAG 
    ACGGTTTATA GTAGTAGTGG TTGGGATTTA TATGCTTGGG CGTTTCAAGC 
    TGAGAGTGAT GTTGCTGAAG TTGTGATTCA TAATCCTGGT GTTGAGGAAG 
    ATCCAGCTTG TGGTCCACTT ATTGATGGTG TTGCTATGAG ATCTCTTTAC 
    CCTCCTAGAC CAACTAATAA GAACATTTTG AAAAACGGAG GATTTGAAGA 
    AGGTCCATTA GTATTACCCG GCTCGACAAC TGGAGTTTTG ATCCCACCGT 
    TTATAGAAGA CGACCACTCT CCTTTACCTG GATGGATGGT GGAGTCTCTC 
    AAAGCTGTCA AGTACGTAGA CGTTGAACAT TTCTCAGTCC CACAGGGTCG 
    CAGAGCTATT GAGCTTGTAG CGGGTAAAGA GAGTGCCATC GCTCAAGTGG 
    TTCGGACTGT CATTGGGAAG ACTTACGTGC TGTCTTTTGC GGTTGGAGAC 
    GCCAACAATG CTTGCAAAGG ATCAATGGTG GTTGAGGCTT TTGCAGGAAA 
    AGATACACTT AAGGTCCCTT ACGAGTCGAA AGGCACAGGA GGGTTTAAAC 
    GAGCTTCTAT TCGATTTGTG GCGGTTTCGA CCCGATCAAG AATTATGTTC 
    TACAGCACTT TCTATGCCAT GAGGAGCGAT GATTTCTCGT CATTGTGTGG 
    GCCTGTGATC GATGATGTCA AGCTTATAAG CGTTCGTAAA CCATAGATGA 
    ATCACCAATC CTATTACAAG AAAATGCATC GTGTGGTCTT CTTTTATTTT 
    CCTTAAACTG TCTTTGGTGT GTGTTGGATT TTATTGAAAC GAGAAGGTGA 
    AAAAAACAGA GTTTTATTTA CGAGAGTTAG GGTTTTATAT AGGCAGATGG 
    GCCTTTGCTT ATATTGTATT TTCTTGTATG AGAAGGCAAA AGAAACGTTG 
    CCTATATCTT ATGTATCTAG GCCTTTTAAT TTTTATGGAA GAGTTAC

    Gene models with high sequence identity

    1. AT5G25460.1 [+] show detail - Protein of unknown function, DUF642
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF642 6.7e-162
    superfamily Galactose-binding domain-like 2.8e-05
    superfamily Galactose-binding domain-like 0.003

    See the detailed result >

    AT5G25460.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function, DUF642
    Computational Description
    Protein of unknown function, DUF642; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT5G11420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR