F14818

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14818

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14818

Determination of introduced cDNA(s)

  • RAFL14-23-D01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-23-D01 - Resource: pda18351

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-23-D01 - full reading 
    GTAGACGCAA TCACCGCCGA TTCTCTCTCT CTCTCTCTCG AGTCTCTCGA 
    CGGTCGCATA TCAAAAGTCC ATTTCTTTCT TCTCTTTGGA GGATCAGCAA 
    CTATGGATGA AGAGTACGAA GTCATAGTTC TGGGTACTGG TCTCAAGGAG 
    TGCATCCTTA GTGGTCTTCT CTCCGTCGAT GGTCTTAAGG TACTTCACAT 
    GGACAGGAAT GACTACTACG GTGGAGAGTC AACTTCTCTT AATCTCAATC 
    AGCTGTGGAA GAAGTTCAGG GGAGAAGAGA AGGCTCCTGC TCATTTAGGT 
    TCTAGCAGAG ACTACAATGT TGACATGATG CCAAAGTTTA TGATGGCTAA 
    CGGAAAGCTT GTTCGTGTCC TTATTCATAC GGATGTGACC AAGTACTTGT 
    CTTTTAAAGC TGTTGATGGA AGCTATGTTT TTGTCCAAGG CAAGGTCCAA 
    AAAGTGCCAG CAACTCCCAT GGAGGCCCTC AAATCTCCTC TTATGGGTAT 
    TTTTGAGAAA CGTCGAGCTG GAAAGTTTTT CAGCTATGTT CAAGAATACG 
    ACGAGAAGGA CCCAAAAACA CATGATGGAA TGGATTTGAG GAGAGTTACA 
    ACTAAGGATT TGATTGCGAA ATTCGGTCTT AAAGAAGATA CTATTGACTT 
    TATTGGTCAT GCAGTGGCAC TTCACTGTAA TGACAATCAT CTCCATCAAC 
    CTGCCTATGA TACTGTAATG AGAATGAAGC TCTACGCAGA GTCCCTTGCA 
    CGTTTTCAAG GAGGTTCACC ATATATCTAT CCTCTCTATG GGTTGGGAGA 
    ATTGCCTCAG GCATTTGCAC GACTTAGTGC TGTCTATGGT GGGACGTATA 
    TGTTGAACAA ACCTGAGTGC AAGGTAGAGT TTGACGAGGA GGGTAAGGTT 
    TCTGGTGTTA CATCTGAGGG AGAGACTGCC AAATGCAAGA AAGTTGTCTG 
    CGATCCTTCT TACCTAACCA ACAAGGTCAG GAAGATTGGC AGGGTTGCTC 
    GGGCGATTGC CATTATGAGC CACCCTATTC CAAACACCAA TGATTCTCAG 
    TCGGTGCAAG TCATTCTACC CCAAAAACAA TTGGGCCGCA AATCAGACAT 
    GTATGTCTTC TGTTGTTCAT ATTCACACAA CGTTGCTCCC AAGGGAAAGT 
    TCATAGCATT TGTGTCAACA GACGCTGAAA CTGATAACCC TCAAACCGAG 
    CTCCAGCCTG GAATCGACCT TCTTGGTCCT GTTGATGAGC TGTTCTTCGA 
    CATCTATGAT AGATATGAGC CTGTCAACGA ACCCACTTTG GACAACTGCT 
    TCATATCAAC GAGTTATGAT GCTACAACAC ACTTTGACAC AACTGTTGTT 
    GATGTGTTGA ACATGTATAA ATTGATCACC GGAAAGGAAC TGGATCTAAG 
    TGTGGATCTT AACGCAGCTA GTGCTGCAGA GGAGGAATGA TGGAAAATAT 
    TGCAAGCTCT GTCTCTCTCT GTTAGTCACC AAATGATGTA ACCGGTTCTC 
    TTTCTCCCTC TTCTTAAAAG TTGTCTCACC AAATGTTCTG TTAAAATACT 
    AAATCAAACC GATCTCATCA TGCGTACCTA TTCCCGGTTA TCGCAGTCTG 
    TTTTTTTCTT CTCAAAAAAA AAA

    Gene models with high sequence identity

    1. AT2G44100.1 [+] show detail - guanosine nucleotide diphosphate dissociation inhibitor 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Rab GDI protein 5.4e-76
    FPrintScan Rab GDI protein 5.4e-76
    FPrintScan Rab GDI protein 5.4e-76
    FPrintScan Rab GDI protein 5.4e-76
    FPrintScan Rab GDI protein 5.4e-76
    FPrintScan Rab GDI protein 5.4e-76
    FPrintScan Rab GDI protein 5.4e-76
    FPrintScan Rab GDI protein 5.4e-76
    FPrintScan Rab GDI protein 5.4e-76
    FPrintScan Rab GTPase activator 1.7e-71
    FPrintScan Rab GTPase activator 1.7e-71
    FPrintScan Rab GTPase activator 1.7e-71
    FPrintScan Rab GTPase activator 1.7e-71
    FPrintScan Rab GTPase activator 1.7e-71
    FPrintScan Rab GTPase activator 1.7e-71
    FPrintScan Rab GTPase activator 1.7e-71
    superfamily FAD/NAD(P)-binding domain 9.2e-65
    superfamily FAD-linked reductases, C-terminal domain 1.4e-43
    superfamily FAD/NAD(P)-binding domain 4.7e-16
    HMMPfam GDP dissociation inhibitor 5.7e-212
    Gene3D no description 1.7e-66
    HMMPanther Rab GTPase activator 2.9e-213

    See the detailed result >

    AT2G44100.1

    Model type
    Protein coding
    Short Description
    guanosine nucleotide diphosphate dissociation inhibitor 1
    Curator Summary
    GDP dissociation inhibitor involved in vesicular membrane traffic
    Computational Description
    guanosine nucleotide diphosphate dissociation inhibitor 1 (GDI1); CONTAINS InterPro DOMAIN/s: Rab GTPase activator (InterPro:IPR002005), GDP dissociation inhibitor (InterPro:IPR018203), Rab GDI protein (InterPro:IPR000806); BEST Arabidopsis thaliana protein match is: RAB GDP dissociation inhibitor 2 (TAIR:AT3G59920.1); Has 1316 Blast hits to 1209 proteins in 256 species: Archae - 2; Bacteria - 0; Metazoa - 652; Fungi - 289; Plants - 183; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR