F14828

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14828

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14828

Determination of introduced cDNA(s)

  • RAFL06-15-M19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-15-M19 - Resource: pda09419

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-15-M19 - full reading
    GAACATTTCA TATATAAGAA GATATACAAG CCTACCAAAC ATAACAAAAC 
    ATATTTTAAA CACCAGCAAG TTTATATTGC AAAGCGTTTC ATCATGATCA
    TGAAGATATC TATGGCTATG TGCAAACAAC CATTGCCTCC TTCGCCGACT
    TTAGACTTCC CTCCAGCGAG ATTTGGTCCC AATATGCTAA CTCTAAACCC
    ATACGGTCCA AAGGACAAAG TTGTGGTCAT CATGGGTGCT ACCGGGACAG
    GCAAGTCACG ACTCTCCGTG GATATAGCCA CACGTTTTCG GGCTGAGATC
    ATAAACTCAG ACAAGATACA AGTCCACCAA GGTCTAGACA TTGTAACCAA
    CAAGATCACG AGCGAGGAGA GCTGCGGGGT ACCGCACCAT CTCCTCGGCG
    TCTTGCCGCC TGAAGCCGAC TTAACCGCCG CGAATTACTG TCACATGGCG
    AATCTCTCCA TTGAATCCGT CCTAAACCGT GGAAAGCTTC CAATCATCGT
    TGGAGGTTCC AACTCTTACG TGGAGGCTCT AGTGGATGAC AAAGAAAACA
    AGTTCAGGTC GAGATACGAC TGTTGTTTTC TATGGGTGGA CGTGGCACTT
    CCCGTTTTGC ACGGGTTCGT GTCTGAGAGA GTTGACAAGA TGGTGGAGAG
    TGGAATGGTT GAGGAAGTCA GAGAATTTTT CGACTTTTCG AACTCTGATT
    ACTCAAGAGG GATCAAGAAA GCAATCGGAT TTCCGGAGTT TGACAGGTTT
    TTCAGGAACG AGCAGTTCTT GAATGTGGAA GACAGAGAAG AACTGTTAAG
    TAAAGTGTTG GAAGAAATAA AGAGGAATAC ATTTGAGTTA GCTTGTAGGC
    AGAGAGAAAA GATCGAACGG TTGAGAAAAG TGAAGAAGTG GTCTATTCAG
    AGAGTGGATG CGACTCCAGT CTTTACAAAG CGAAGGTCCA AGATGGATGC
    TAACGTGGCC TGGGAGAGGC TCGTGGCTGG ACCAAGCACA GATACTGTGT
    CGCGGTTTCT GCTGGACATT GCCAGCCGAC GACCGCTCGT GGAAGCTTCA
    ACAGCGGTTG CGGCCGCCAT GGAACGCGAG TTGTCGCGGT GTCTAGTGGC
    GTGATCAGTT GTAACCACGT AAAAGATAAG GGTGGATTCT GAAGAAATGT
    GGTTAATTTA CGCCAATGGT ACTTATTGGT GATGGTGACG GGGCAATGAT
    CCGATCAAAA TATACGAGGC TACGATGAGT GGTGGAAAAA TATAAAAAAA
    TAAGCTACAA AAATAAAATA TGATATATAT GCATATCGTA TTATCGTATA
    TAGTATTGTC AGATACTGAA AATTTTGGCA TAACGGTTAT TCAGTATTAT
    CATCTACTTT TTTGGATGTA AGTGAGACTG TGAGTGGAAT GCTATATTTG
    C

    Gene models with high sequence identity

    1. AT3G63110.1 [+] show detail - isopentenyltransferase 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam tRNA isopentenyltransferase 1.7e-18
    HMMPfam tRNA isopentenyltransferase 1.2e-11
    HMMPanther CYTOKININ SYNTHASE 5.6e-132
    HMMPanther tRNA isopentenyltransferase 5.6e-132
    superfamily P-loop containing nucleoside triphosphate hyd 1.3e-14

    See the detailed result >

    AT3G63110.1

    Model type
    Protein coding
    Short Description
    isopentenyltransferase 3
    Curator Summary
    Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast.
    Computational Description
    isopentenyltransferase 3 (IPT3); CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 5 (TAIR:AT5G19040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR