F14835

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14835

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14835

Determination of introduced cDNA(s)

  • RAFL07-09-G24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-09-G24 - Resource: pda04029

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-09-G24 - full reading 
    AAAAACTGAA CAAAATTTGA AGAGTTATTA AAATGGGGTG TACATCTTCC 
    AAGCAAGCAA AAGCTAACGT CGTCGCCGAC GTTTACAAAC CACCGCCGTC 
    TAGTTTCGCG GTGTTTGATG TCAACGCCAT CCAAGAGCCA TGGCTAAAAT 
    TTGAACATGA AGATGATGAG AAACCGCCAC GCTCCACCGT CTTCGACCGT 
    CTCGACGAGG ATGATGATGA TGATGATGAT GATGGTGATG ACGCTCCTAA 
    AACATGGGAA GAAGTCAGCA AATCTCTAGA AACTAAACTT AAACCTGCCG 
    CCGTTAAACC GCCGGAAGTA GACTCTGTTA AACCTCCGGC GACTCCTCCA 
    CGGCGGCTTC CGCGGAAGAG CGCATCGTTC CACACACTGG ACGAGCTTGA 
    AGTGAGGGCC AAAAGAAGCA TCGCCGCGCA AATCCCGACG ACAATGGTTA 
    AGCTTAAGAG AACCGAGTCG ATGTCCAAGC TAAGACCCGA GTCAGATGAT 
    CGAACCGAGT CCACTCAGTC GTCCTACTCG GGGCCTCGGT CAGTGAAGGA 
    GAACATATTC GTCAAGAGAG ACAGAGAACG GAGGGAGAAA GAAGGGAACA 
    AGAAGCCGGT GATGAACTGG GACCCACTTA GGGAGTTCCC GGAGAAGTGT 
    CCGCCGGGAG GAGGGGAAGG TTTGATTGTC TACACGACGT CGTTGCAAGG 
    AGTGCGTCGC ACGTACGAGG ATTGTATGCG TGTGAGGGCC ATCATGGAGC 
    AGCAAGGAGT TGTGGTGGAC GAGAGGGACG TGTCTTTAGA CGCCGGAGTC 
    TTGAGCGAGC TTAAGGAGCT TCTCCAAGAC GAAGCATCAG TGGCGCCGCC 
    GCGAGTGTTT GTGAAAGGGA GGTACTTGGG AGGAGCAGCG GAAGTGACAG 
    CGATGAATGA GAACGGGAAG TTAGGGAGGG TGTTGCGGTG GGCACGTGTG 
    GAGAGAGTAG GGGAGGAAGG GAGGCTCACG TGTGAAGGGT GCGGAGGAGC 
    GAGGTGGTTG CCTTGTTTCG AGTGCGGCGG AAGCTGTAAG GTGGCGGCGG 
    TTGGGGCGGC CAAAGGTGAA AGGTGGGAGA GGTGTGTCAA GTGTAATGAG 
    AATGGATTGA TTCGTTGTCC CGTGTGTTTT GTTAATTAAG AACATTATTA 
    GTTTACACAA GCAAATAGAG GTGTGTCAAA TATACTTTGT CCCGTTTGTT 
    TTGTTATATG TATGTGACAC GTTTGATTTT GTGGAATTGA AAATGATTTG 
    AAACCAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT1G64500.1 [+] show detail - Glutaredoxin family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glutaredoxin 2.6e-10
    ProfileScan Glutaredoxin 15.222
    superfamily Thioredoxin-like fold 2.2e-19
    Gene3D Thioredoxin fold 4.7e-14
    HMMPanther GLUTAREDOXIN-1, GRX1 2.9e-07
    HMMPanther GLUTAREDOXIN 2.9e-07

    See the detailed result >

    AT1G64500.1

    Model type
    Protein coding
    Short Description
    Glutaredoxin family protein
    Computational Description
    Glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutaredoxin family protein (TAIR:AT4G10630.1); Has 634 Blast hits to 632 proteins in 121 species: Archae - 0; Bacteria - 58; Metazoa - 133; Fungi - 28; Plants - 384; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR