F14843

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14843

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14843

Determination of introduced cDNA(s)

  • RAFL05-04-J20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-04-J20 - Resource: pda07246

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-04-J20 - full reading
    ATATCCAACA ACAAAAACAT AAGCTAAGAA AACGAAACTC AACTAATTTT 
    GTTATCACCC AAAAAGAAGT TCAAACACAA TGGCTTTCGC TTTGAGGTTC
    TTCACATGCC TTGTTTTAAC GGTGTGCATA GTTGCATCAG TCGATGCTGC
    AATCTCATGT GGCACAGTGG CAGGTAGCTT GGCTCCATGT GCAACCTATC
    TATCAAAAGG TGGGTTGGTG CCACCTTCAT GTTGTGCAGG AGTCAAAACT
    TTGAACAGTA TGGCTAAAAC CACACCAGAC CGCCAACAAG CTTGCAGATG
    CATCCAGTCC ACTGCGAAGA GCATTTCTGG TCTCAACCCA AGTCTAGCCT
    CTGGCCTTCC TGGAAAGTGC GGTGTTAGCA TTCCATATCC AATCTCCATG
    AGCACTAACT GCAACAACAT CAAGTGAAAT GGAAGCTTAC GTCGTCGTTT
    TGGCGTTAAG AGTATGGTTT ACCAGAAGTA CTAGAATAAA ATACGGCTAT
    ATATCTTAGC TGATATTACC ATGTATTTGT TTTTGTCTCA ATGCTTTGTC
    TTATTTTCAT ATCATATGTT GTATTGATGT GCTAAAACTA TGATAATAGT
    ACCTTATTAG CC

    Gene models with high sequence identity

    1. AT5G59320.1 [+] show detail - lipid transfer protein 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 0.0000000000000074
    HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 0.0000000069
    FPrintScan Plant lipid transfer protein/Par allergen 1.6e-28
    FPrintScan Plant lipid transfer protein/Par allergen 1.6e-28
    FPrintScan Plant lipid transfer protein/Par allergen 1.6e-28
    FPrintScan Plant lipid transfer protein/Par allergen 1.6e-28
    FPrintScan Plant lipid transfer protein/Par allergen 1.6e-28
    Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 1.1e-32
    PatternScan Plant lipid transfer protein/Par allergen 0
    superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 8.3e-33

    See the detailed result >

    AT5G59320.1

    Model type
    Protein coding
    Short Description
    lipid transfer protein 3
    Curator Summary
    Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
    Computational Description
    lipid transfer protein 3 (LTP3); FUNCTIONS IN: lipid binding; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus; LOCATED IN: cell wall, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 4 (TAIR:AT5G59310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR