F14849

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14849

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14849

Determination of introduced cDNA(s)

  • RAFL09-22-D24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-22-D24 - Resource: pda08041

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-22-D24 - full reading 
    ATACAAAAAC TGAAACCTTT CTCTATTTAT CTCTCTATAC ACAACAATGG 
    CGGTCTTCGT TTTATCTCTA CTCATACTCT CTTCCTTCTC AGCCATTCCA 
    TTCACTTATG CAGATTCTGG AATGATCGGA GTTAACTACG GCCGTATAGC 
    AGACAATCTT CCGGCACCGG AGAAAGTAGT TGAGCTACTG AAAACACAAG 
    GAATCAACCG CATCAAGCTT TACGACACCG AGACAACTGT ACTAACCTCA 
    CTCGCGAACT CCGGAATCAA AGTCGTTGTC TCTCTCCCCA ACGAAAACCT 
    CGCTTCCGCC GCCGCAGATC AGAGCTACAC CGACACTTGG GTTCAGGACA 
    ACATAAAGAA GTACATTCCA GCGACGGATA TCGAAGCAAT CGCCGTTGGG 
    AACGAAGTGT TCGTCGATCC GAGGAACACG ACGACGTATC TCGTTCCAGC 
    TATGAAGAAT GTTCAAAGCT CTCTCGTCAA GTTCAATCTC GACAAATCCA 
    TTAAGATCTC GTCGCCGATT GCTTTAAGCG CGTTGGCGAG TTCGTATCCA 
    CCGTCGGCTG GTTCGTTTAA ACCGGAGTTA ATCGAACCGG TTATTAAACC 
    GATGCTTGAT CTCCTCCGCA AAACGTCGTC GCATCTTATG GTGAATGCTT 
    ATCCTTTCTT TGCTTACGCA GCTAACGCCG ATAAGATCTC GTTGGATTAC 
    GCGTTGTTTA AGGAGAACGC CGGGAATGTT GATTCCGGTA ACGGTTTGAA 
    GTATAACAGT CTCTTAGACG CTCAGATCGA CGCCGTTTTC GCCGCAATGT 
    CCGCCGTTGG ATTTAACGAC GTTAAGCTTG TGGTGACAGA GACAGGCTGG 
    CCTTCTGCCG GAGACGAGAA CGAGATTGGT GCTGGTTCGG CTAACGCGGC 
    GGCGTATAAC GGCGGGTTAG TTAAAAGAGT GTTGACGGGA AACGGAACGC 
    CGTTAAAACC GAAGGAGCCA CTAAACGTTT ATCTGTTCGC TCTGTTTAAC 
    GAGAATCAGA AAACGGGTCC GACTTCTGAG AGAAACTACG GGTTGTTTTA 
    CCCAAACGAG AACAAAGTGT ATGACGTTTC GCTCAACGGT AAGTCAACGC 
    CGGTCAACGA TAACAAAGAG AAGGTTGTTC CGGTGAAACC GTCGCTCGTG 
    GGACAGACGT GGTGTGTGGC GAATGGTAAA ACGACGAAGG AGAAGCTTCA 
    GGAAGGTCTC GACTACGCTT GTGGCGAAGG AGGTGCTGAT TGCCGTCCGA 
    TTCAACCGGG TGCCACGTGT TATAATCCTG AATCGTTAGA AGCTCACGCT 
    TCCTACGCGT TCAACAGTTA CTATCAGAAG AACGCACGTG GAGTTGGCAC 
    GTGTAATTTT GGTGGTGCAG CGTACGTGGT CTCGCAACCT CCTAAGTATG 
    GGAAATGCGA GTTTCCAACA GGGCATTGAA ATGGATATAG AGAAGAAGAG 
    GATCGTGCGG ATTTATTTAC GTTATTTATT TTGATACATT GTTCTTTTGT 
    CATTCGAGTA TATGATTTGC GTATATTTAT TTTTATTATT GTATATTTGG 
    TTGGTTTCAT CGGATAAATA GTCAGATTTT CTTTCCCCC

    Gene models with high sequence identity

    1. AT5G55180.1 [+] show detail - O-Glycosyl hydrolases family 17 protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Glycoside hydrolase, family 17 0
    HMMPfam Glycoside hydrolase, family 17 2.1e-100
    HMMPfam X8 6.2e-31
    Gene3D Glycoside hydrolase, subgroup, catalytic core 3.5e-111
    superfamily Glycoside hydrolase, catalytic core 7.9e-105
    HMMSmart X8 2.4e-47

    See the detailed result >

    AT5G55180.1

    Model type
    Protein coding
    Short Description
    O-Glycosyl hydrolases family 17 protein
    Computational Description
    O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G26830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR