F14919

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14919

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14919

Determination of introduced cDNA(s)

  • RAFL02-06-B01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-06-B01 - Resource: pda02234

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-06-B01 - full reading 
    TCTCTCTCTC TCTCTGCTCC ATTTCTCTCA CTTTCTTCAC ATCTCTGAAG 
    CTCTTCGTCA CGCATCTACA ATGGCATCGA TGATGCAACC GCAGATCATA 
    CTGCTGAAGG AAGGGACGGA CACATCTCAG GGCAAAGCGC AACTAGTAAG 
    CAACATCAAC GCTTGCACTG CTGTTGGAGA TGTAGTTCGA ACCACGCTCG 
    GGCCACGAGG GATGGACAAA CTCATTCACG ACGATAAAGG ATCCGTCACC 
    ATTTCTAACG ATGGTGCTAC CATCATGAAG CTCCTCGACA TTGTTCATCC 
    TGCTGCTAAG ATCCTCGTCG ATATCGCCAA ATCCCAAGAC TCCGAGGTGG 
    GTGATGGGAC AACTACAGTG GTTCTTCTTG CAGCAGAGTT TTTGAAGGAA 
    GCGAAGCCAT TTATTGAGGA TGGTGTTCAC GCTCAGAATC TAATTAGGAG 
    TTACCGCACT GCAAGCACTT TGGCAATTGC CAAGGTTAAA GAACTCGCTG 
    TTAGCATTGA GGGGAAGAGT GTAGAGGAAA AGAAAGGTTT ATTGGCTAAA 
    TGTGCTGCTA CGACTCTCTC ATCTAAGCTT ATCGGTGGAG AAAAGGAGTT 
    TTTTGCTACA ATGGTTGTTG ATGCTGTTAT GGCCATTGGG AATGACGACA 
    GGCTAAATCT GATTGGGATC AAGAAGGTTC CTGGTGGCAA TATGCGAGAC 
    TCTTTCCTCG TTGATGGTGT AGCTTTCAAA AAAACATTCT CGTATGCTGG 
    TTTTGAGCAA CAGCCAAAGA AATTTCTTAA CCCCAAAATT CTCTTGCTTA 
    ACATCGAATT GGAGTTGAAA TCTGAGAAGG AAAACGCTGA AATTAGGCTG 
    TCAGATCCAT CACAGTACCA GTCAATAGTT GATGCAGAAT GGAATATCAT 
    TTATGACAAA CTAGACAAAT GTGTTGAGAG TGGAGCAAAA GTTGTTCTTT 
    CTCGATTGGC TATTGGTGAT CTAGCTACTC AGTATTTTGC CGATCGTGAT 
    ATTTTCTGTG CTGGTCGTGT TGCTGAGGAA GATCTTAACC GTGTGGCTGC 
    TGCAGCTGGA GGAACAGTTC AGACAAGTGT TAACAACATA ATAGATGAGG 
    TTCTTGGAAC TTGTGAGATT TTTGAGGAAA AACAAGTTGG TGGGGAGAGA 
    TTTAATATAT TCAGTGGTTG CCCTTCAGGA CGAACAGCAA CTATTGTTCT 
    CCGTGGTGGA GCTGATCAGT TCATCGAAGA AGCTGAGCGG AGTTTACATG 
    ATGCGATTAT GATTGTGAGA AGAGCTGTGA AGAACTCAAC TGTTGTTCCT 
    GGAGGTGGAG CTATAGATAT GGAGATAAGC AAGTACCTGA GGCAGCATTC 
    AAGAACAATT GCTGGGAAGT CACAGCTTTT CATCAACTCT TATGCGAAGG 
    CTCTAGAGGT TATTCCACGA CAGTTATGTG ATAATGCTGG ATTTGATGCA 
    ACTGACGTCT TGAATAAACT TAGACAAAAA CACGCCATGC AAAGCGGTGA 
    AGGAGCTTCG TATGGAGTGG ACATTAACAC TGGTGGCATA GCAGATTCTT 
    TTGCTAACTT CGTTTGGGAA CCAGCAGTTG TGAAGATCAA CGCAATAAAT 
    GCTGCGACTG AAGCGGCTTG CCTCATTCTT AGTGTCGACG AAACCGTGAA 
    GAACCCTAAA TCTGAGAGCG CACAGGGAGA CGCCGCAGGT GCAATGGGGA 
    GAGGACGCGG TGGAGGTCGT GGCCGTGGAA TGCGAAGGCG ATAAGCTCCG 
    TCTCTAATGC CAAACTTGTG GGATTCTTCT TCTTCTTCTC TAATTTCGAT 
    TTTGTTGAAT TTTTGTTTTG AAGTTAAAAA ACCTATTATT GGGTTTGTGT 
    TTGTTCAATT AGAATACTGG TTGGGTATGT ATGTCTATAC AATCTGTGAA 
    ACATAAGTTT TAGTGTTGTT TTGGTTAAGG AGTTAAG

    Gene models with high sequence identity

    1. AT3G11830.1 [+] show detail - TCP-1/cpn60 chaperonin family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr T-complex protein 1, eta subunit 0
    PatternScan Chaperonin TCP-1, conserved site 0
    PatternScan Chaperonin TCP-1, conserved site 0
    PatternScan Chaperonin TCP-1, conserved site 0
    superfamily Chaperonin Cpn60/TCP-1 2.7e-90
    superfamily GroEL apical domain-like 3.1e-51
    superfamily GroEL-intermediate domain like 3e-28
    Gene3D no description 9.4e-78
    FPrintScan Chaperone, tailless complex polypeptide 1 1.2e-30
    FPrintScan Chaperone, tailless complex polypeptide 1 1.2e-30
    FPrintScan Chaperone, tailless complex polypeptide 1 1.2e-30
    FPrintScan Chaperone, tailless complex polypeptide 1 1.2e-30
    FPrintScan Chaperone, tailless complex polypeptide 1 1.2e-30
    HMMPfam Chaperonin Cpn60/TCP-1 8.1e-149
    HMMPanther T-complex protein 1, eta subunit 0
    HMMPanther Chaperonin Cpn60/TCP-1 0

    See the detailed result >

    AT3G11830.1

    Model type
    Protein coding
    Short Description
    TCP-1/cpn60 chaperonin family protein
    Computational Description
    TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, eta subunit (InterPro:IPR012720), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: T-complex protein 1 alpha subunit (TAIR:AT3G20050.1); Has 19825 Blast hits to 19758 proteins in 3880 species: Archae - 808; Bacteria - 8913; Metazoa - 2158; Fungi - 1512; Plants - 862; Viruses - 0; Other Eukaryotes - 5572 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR