F14928

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14928

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14928

Determination of introduced cDNA(s)

  • RAFL09-15-E19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-15-E19 - Resource: pda01789

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-15-E19 - full reading
    TGAAGGTAGG GCTAAAACCT TAGAATAGCC GGAGAGAAGA AGGCGAGAAG 
    AGGAGCGACA AGGGCGAAGC TGCAGAATTC TTCGGTAATT TTCAGATTCG
    GTTGAATAAT GGCGGCTGCG GCTTTTGGGC AGTTAAATCT AGAGGAGCCT
    CCACCGATTT GGGGATCTCG TAGTGTCGAT TGCTTCGAGA AGCTTGAACA
    GATTGGTGAA GGAACTTACG GCCAAGTGTA CATGGCTAAA GAAATTAAAA
    CTGGTGAAAT CGTGGCTCTG AAAAAGATCC GTATGGACAA TGAAAGAGAA
    GGGTTTCCGA TAACCGCTAT CCGGGAGATC AAAATTCTGA AGAAGCTGCA
    TCATGAAAAT GTCATCCATT TGAAAGAGAT TGTTACTTCT CCAGGTCGAG
    ATAGGGATGA TCAAGGAAAG CCAGATAATA ACAAATACAA GGGTGGAATC
    TACATGGTCT TTGAGTACAT GGATCATGAC TTGACTGGAC TTGCTGATCG
    TCCTGGACTG AGATTTACGG TTCCTCAGAT AAAGTGTTAC ATGAAGCAAC
    TGCTGACTGG GCTTCACTAT TGTCATGTGA ATCAAGTGCT TCACCGTGAT
    ATAAAAGGTT CGAATCTACT TATTGACAAT GAGGGAAATT TAAAGCTAGC
    GGATTTTGGG CTTGCTCGGT CATATTCTCA TGATCATACT GGAAACCTCA
    CAAATCGTGT CATCACTTTG TGGTATAGGC CCCCTGAATT GTTACTTGGT
    GCAACTAAAT ATGGACCAGC GATTGACATG TGGTCAGTTG GATGCATATT
    TGCTGAACTT TTGAATGGAA AACCAATCTT GCCTGGGAAA ACTGAGAATG
    AACAATTGAA TAAGATTTAT GAGCTTTGTG GATCACCTGA TGAAAGCAAC
    TGGCCTGGAG TTTCCAAGAT GCCTTGGTAT AACCAAATGA AATCATCTCG
    GCCCTTAAAG AGACGCGTAA GGGAGATCTA CAGACACTTT GATCGCCATG
    CCCTTGAACT ACTTGAGAAA ATGTTGGTAC TTGACCCATC TCAGAGAATA
    TGCGCAAAGG ATGCTCTTGA TGCTGAGTAC TTTTGGACTG ATCCGCTGCC
    ATGTGATCCA AAGAGTCTAC CGACATATGA ATCATCACAT GAGTTCCAGA
    CAAAGAAAAA ACGGCAACAG ATGCGTCATA ATGAGGAAGC AGCCAAAAAA
    CAGAAACTGC AGCATCCACA GCAGCAACAT TCTCGTTTAC CTCCACAGCA
    ACACGGTGTT GGCCAGTCTC ATGCCGCTCC ACTTTGGCCT GCTGGACCAA
    ACCACCCTAT GAACAACAAC GCACCACCAC CCCAAATACC TGCTGGTGGC
    CATTACTATG GAGGAAAGCC CCGTGGTGGT GCACCTGTTC CAAACCGGTA
    CCCTCCTAGC GGAAACCAGA CTGGTGGTTA TAATAATCAG AGCCGTGGAG
    GTTACAGCAG CGGAGCATAT CCTCCACAAG GTCGTGGTGC ACCATATGGC
    GCCGGTCCTA GAGGACCTAG CGGTGGCTAT GGTGTTGGAC CACCCAACTA
    CTCACAAGGT GGTGGTCAGT ATGGTGGATC TGGTGGCTCT GGAAGAGGTC
    AGAACCCTAT GGGTGGTGCT AGAAACCAAC AATATGGATG GCAACCGTAA
    AGAGAACTCA AAGAGACTCG TATGGTGTGG TCTTGGCTTG ATGTCTTTAA
    GGCAGTTGTG ATTTTAGATA TGAAGACTTA TCTTCGCGAA AGAGAATCTA
    TTTTCATTTG ATTTCTTGTC TTAATGGCAT TCTTCCAAAC ATTCTGTGAT
    TGTTGTATGT TTAAATCAAG GTTTATATAT CAGAACACAG GAAACCAAAA
    AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT5G64960.1 [+] show detail - cyclin dependent kinase group C2
      E-value: 0; Score: 100.00

    AT5G64960.1

    Model type
    Protein coding
    Short Description
    cyclin dependent kinase group C2
    Curator Summary
    Encodes CDKC;2, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development. Co-localizes with spliceosomal components in a manner dependent on the transcriptional status of the cells and on CDKC2-kinase activity. Expression of CDKC2 modifies the location of spliceosomal components.
    Computational Description
    cyclin dependent kinase group C2 (CDKC2); FUNCTIONS IN: kinase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, nuclear body, nucleus, microtubule, spliceosomal complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase C;1 (TAIR:AT5G10270.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR