F15114

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15114

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased length (PATO:0000574)
    (Rosette leaf::Shape::short)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15114

Determination of introduced cDNA(s)

  • RAFL06-72-K12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-72-K12 - Resource: pda03399

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-72-K12 - full reading 
    ACATTCACAC ACACCCACAT TTTACATTCA ACTCTTATAC AATATGCCCA 
    TGTTAATGGC GACACGTATC GATATAATCC AAAAGCTTAA TGTATATCCA 
    AGGTTTCAAA ACCATGACAA GAAGAAACTA ATCACTCTCT CCAATTTGGA 
    CCGTCAGTGT CCTTTACTCA TGTACTCTGT CTTCTTCTAC AAGAATACCA 
    CAACTCGTGA CTTTGACTCC GTCTTCTCCA ACCTGAAGCT CGGGCTGGAG 
    GAGACTATGT CTGTGTGGTA TCCCGCGGCA GGGAGACTGG GTTTGGACGG 
    AGGTGGCTGC AAGCTCAACA TCCGGTGTAA CGATGGTGGC GCAGTCATGG 
    TGGAGGCGGT GGCGACAGGT GTCAAGTTGT CCGAGCTTGG TGATTTGACT 
    CAGTACAATG AGTTTTATGA GAATTTAGTT TACAAGCCTT CCTTGGATGG 
    TGATTTCTCT GTGATGCCTC TTGTTGTTGC TCAGGTGACA AGATTTGCAT 
    GTGGAGGTTA CTCAATTGGA ATCGGTACAA GCCACTCTCT ATTTGATGGA 
    ATCTCAGCTT ACGAATTCAT TCACGCGTGG GCCTCCAACT CTCACATTCA 
    CAACAAATCC AACAGCAAGA TTACTAATAA AAAGGAAGAT GTGGTCATCA 
    AACCGGTTCA TGATCGACGA AATCTACTGG TTAACCGGGA TGCTGTCCGA 
    GAAACCAATG CTGCAGCCAT TTGTCATCTG TACCAGTTGA TCAAACAGGC 
    GATGATGACC TATCAGGAGC AAAACCGTAA CTTAGAGTTA CCAGACTCTG 
    GTTTTGTGAT CAAAACGTTC GAGCTTAATG GCGATGCGAT AGAAAGCATG 
    AAGAAGAAAT CACTAGAAGG GTTCATGTGC TCCTCCTTTG AGTTTCTTGC 
    TGCTCATTTG TGGAAGGCAA GAACAAGGGC TTTAGGGTTG AGGAGAGACG 
    CCATGGTGTG TTTACAATTC GCAGTGGACA TAAGGAAAAG AACGGAGACA 
    CCGCTGCCAG AAGGGTTTTC CGGCAACGCA TACGTGCTTG CCTCGGTGGC 
    ATCCACCGCC AGAGAATTAC TTGAAGAGCT AACACTCGAG TCAATAGTCA 
    ACAAGATCAG AGAAGCCAAG AAATCAATTG ACCAAGGTTA CATAAACTCT 
    TACATGGAAG CACTCGGAGG TAGTAATGAC GGAAATCTCC CTCCTCTCAA 
    AGAGCTAACC CTAATCTCCG ACTGGACAAA AATGCCATTT CACAATGTTG 
    GCTTTGGCAA CGGCGGCGAG CCAGCGGATT ACATGGCCCC ACTGTGTCCA 
    CCGGTGCCAC AAGTTGCTTA TTTCATGAAG AACCCTAAAG ATGCCAAAGG 
    TGTTCTTGTG AGGATTGGCT TGGACCCACG AGATGTTAAT GGCTTTTCAA 
    ATCATTTCCT TGATTGCTAA TATATTAGCT GGTGATAATT AATTAATTAG 
    TAGAATCTTT GTGGTAGTAT ACAGTATGAT AATGGCTCCT CTATATGCAT 
    GCGTGTGCGC TAAAGACACT TTATTGTAAT TGGGTTATGA TGATGTATAA 
    TTTAATGACA TCTCTCTGCT TTGC

    Gene models with high sequence identity

    1. AT4G31910.1 [+] show detail - HXXXD-type acyl-transferase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Transferase 1.3e-67
    Gene3D no description 7.1e-39
    Gene3D no description 1.1e-36

    See the detailed result >

    AT4G31910.1

    Model type
    Protein coding
    Short Description
    HXXXD-type acyl-transferase family protein
    Computational Description
    HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G41040.1); Has 2584 Blast hits to 2554 proteins in 136 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 40; Plants - 2539; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR