F15120

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15120

Determination of introduced cDNA(s)

RAFL09-09-G17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-09-G17 - Resource: pda05258

full reading [+] show sequence

AAAAGTGAGA GACACACAAC TTCGGAGCGA ATCTATTCTT CTTCTTCTTC 
TTCTTCTTCT TCTTCTTCTT CCTCCGTTTT TTTCATCTTC TTCTCTGTTT 
CGAGAGATCC ACTAGTGAAA GAGTCAGCAC CATGGCCATG GTCAAAGAGA 
AAGAACAAAA CACTAAAGAC AAAAAACTCC TCGTCGGCGT CATTTGGAAC 
TTCTCCGCCG AGCTCAAGCT CACTTTCATG GCGTTACTTG TTCTCTGCAC 
TTTAGCTACT CTCTTACCTT TCATACCTTC TTCATTCTCT CTCTCCACTT 
CCGATTTCCG CTTCTGCATC TCACGCTTCT CCTCCGCCGT CCTCTCAACA 
CCACCACCAC CGTAGAAGAA TCATCATCCT CACCGTCACC GGAGAAGAAC 
CTAGATCGAG TTTTGGATAA CGGAGTTATT AAACGGACGT TTACTGGCTA 
CGGCTCAGCA GCTTATAACT TCGTCTCAAT GAGTGCTTAC AGAGGCGGCG 
TTAACTCATT CGCCGTTATC GGATTATCAT CAAAACCATT ACACGTGTAC 
GGTCATCCTT CGTATAGATG CGAATGGGTC TCATTAGACC CGACTCAAGA 
TCCGATTTCA ACAACCGGGT TTAAAATCTT AACCGATTGG GGTTACGGAC 
GGATCTACAC AACAGTCGTC GTTAACTGTA CTTTCTCATC AATCTCCGCC 
GTGAATCCAC AAAACTCCGG TGGAACTCTC ATCCTCCACG CCACCACCGG 
AGATCCAACT CTCAATCTCA CCGATTCAAT CTCAGTCCTA ACCGAACCTC 
CCAAATCCGT CGATTTCGAT CTCTATAACT CCACGAAGAA GACGAAGAAG 
TACGATTATC TCTATTGCGG ATCGTCCTTA TACGGTAACC TAAGTCCGCA 
ACGAGTTAGA GAATGGATCG CTTACCACGT TAGATTCTTC GGTGAACGGT 
CACATTTCGT GCTACACGAC GCCGGAGGGA TTCATGAGGA AGTGTTCGAG 
GTTTTAAAGC CATGGATTGA GCTAGGGAGA GTGACGTTAC ATGATATTAG 
AGATCAAGAA CGATTCGATG GATATTATCA TAATCAGTTC ATGATAGTGA 
ATGATTGTTT GCATAGGTAT AGATTCATGA CGAAGTGGAT GTTCTTCTTT 
GATGTTGATG AGTTTTTACA TGTTCCAGTG AAAGAGACGA TTTCGTCTGT 
GATGGAATCT TTGGAGGAAT ATTCTCAGTT TACTATTGAA CAGATGCCTA 
TGAGTAGTCG GATTTGTTAT TCCGGTGATG GTCCGGCGAG AACTTACAGG 
AAATGGGGAA TTGAGAAACT GGCATATAGA GACGTCAAGA AGGTTCCAAG 
ACGGGATCGA AAATACGCTG TCCAGCCGGA GAATGTATTC GCGACAGGCG 
TACACATGTC TCAGAATCTA CAAGGGAAAA CATACCACAA GGCTGAAAGC 
AAAATCCGTT ACTTCCACTA CCATGGTTCG ATCTCTCAGC GCCGCGAGCC 
TTGTCGTCAA CTTTTTAACG ATTCTCGAGT CGTGTTCGAG AACACTCCTT 
ATGTGCTAGA CACTACAATA TGTGATGTTG GCCTTGCTGT GAGAACGTTC 
GAGTTGAGAA CGATCGGTGA TCGGCTGCTA CGGACAAGAC AATGAAGAGA 
TGGCAAAAAT GAATAGTGAA TGTAATCAAT CTTTAGAAAG AAGAATTAGA 
AGGTGTTAAG ATGAGTTACT TTGTATTATT TTCTTTTGGG GGTATATTCT 
TTTATTGTAT CATATAATTT GGGTAATGGG TTCATTAATA CAGCTTGAAA 
ATAAAG

Gene models with high sequence identity

AT4G20170.1 [+] show detail - Domain of unknown function (DUF23)
E-value: 0; Score: 99.94

InterPro Scan Digest

Program	Description	E-value
HMMPanther	UNCHARACTERIZED	8.2e-09
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPfam	Protein of unknown function DUF23	4.4e-29

See the detailed result >

AT4G20170.1

Model type: Protein coding
Short Description: Domain of unknown function (DUF23)
Computational Description: Domain of unknown function (DUF23); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G44670.1); Has 199 Blast hits to 199 proteins in 36 species: Archae - 0; Bacteria - 27; Metazoa - 44; Fungi - 2; Plants - 116; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link: InterPro Scan - TAIR