F15121

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15121

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15121

Determination of introduced cDNA(s)

  • RAFL09-49-L16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-49-L16 - Resource: pda08430

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-49-L16 - full reading 
    AAAATCCAAG TCGACGAATA CGACGATTTT AGTTATTCGG CCGGAAAGGT 
    TGATAATTTC GTGTGATTAA TCTATGGAGT TGGAATTTGA ATCAAAGTAC 
    GAGATTAACC GTACGGCGGA GTTCATTATT AGCAAAAGCT TCACCAGAAT 
    TGCTTTACAG TTCCCGGATG AGTTGTTAAA AGATTCGACT AAGGTCGTGA 
    GTGCTCTTAA GAGCAAAACT CGTTTGCTTA CTGACAGAGA AGTCAGGTTC 
    TTTGTAATGG CTGACACAAC TTATGGTAGT TGCTGTATTG ATGAAGTTGG 
    AGCTTTGCAT ATTGATTCTG AATGTGTTGT TCATTACGGT CAAACATGTC 
    TAAGCCCGAC ATCAGTTCTT CCAGCATTCT TCGTTTTTGG GAAAGCTTCG 
    ATAAACGTCT CCAGCTGTGT TAAGCATTTG ATAGATTATG CGTCAAAGAG 
    CGATAAGCCT ATCATGATTC TTTATGGTCT AGAATACGCG CATGTAATTC 
    CACAAATCCG AGAAGAATTA GGATTATCGA AGACTGATTC TCAATTATCT 
    GTAGCCAATG TCTTGTGTTC ATTCATTAGT CCATCCAAAG ATCCTAGAGA 
    ATCCATGGAG CATCCGAGAC CATATAGCGA AAGTGATTCT AGTGATAGCT 
    TATCCTCATC TAGGAGCTAT AGACTAGGAG GGCTAACTTG GGACTTGCCA 
    GAAGGAAGCA AAATCGAGGA CTATTTACTT TTCTGGATAG GTTCTGACAG 
    TTCAGCTTTT GCCAATGTAG TACTGACCTT CAATGGTTGT GACATAGTCA 
    GATATGATGC TGAAGAAGAT TCTTTGGTGA CGGAATTTTA TCAACAAAGA 
    AGGATACTTA AGCGACGATA TTACTTGGTG GAAAAAGCTA AGGATGCGAA 
    TATTATAGGT ATTTTGGTGG GGACTCTTGG TGTTGCTGGT TACCTTCATA 
    TGATTCACCA TATGCAAGCA CTCATATCTG CAGCTGGCAA AAAATCTTAC 
    ATTCTTGCCA TGGGACGGCC TAACCCGGCC AAACTCGCAA ACTTCCCCGA 
    GTGCGATGTT TTCATCTACA TCTCATGTGC CCAAACGGCT CTTTTAGATA 
    GCAAAGAGTT CATGTCCCCT GTCATTACTC CGTTCGAAGC CAATCTTGCT 
    TTTAGCAGAG GGAGTGAATG GACAGGTGCA TACCTAATGC ATTTCCAAGA 
    TGTGATCAAC TCTGTAAAAT CAGAATCAGA AGCACATATC GGATCAGAGG 
    AGCCACGGTT CTCCTTCTTT CAGGGTGGTT ACGTAGAAGA TCACAAAACA 
    AATGATCAAG CTAAGAATGG AGAAGAAGAC ACAGGAGAGA CAATGACATT 
    GGTACAAGCT GCAGAGAAAG CATTGCAGTT GCGAGGCAAT GATCATAACT 
    CATTGACTAA ACAAACCGCT GCAAAATCAG GACCTGAGTA TTTCCTTAAC 
    CGAGTTTATC GCGGTTTGGA GATAAATAGT GAGAATACTT TGCCGGAGCC 
    TTATATAGTT GGGAGAAGCG GGAAGGCGTC TGGATACAAG CACGAGTAGC 
    AACTCCAAGA AGTTGAGTTT GATCACAAAG AAAGATTTGT GCTATGTCAG 
    ACACTGTTTT ACTGGCTTCC TATGAGATTG TTAGAAGAGA AAATGTTTGC 
    ACACACACAA AATGTTTGCC GTCCATTATA TCCTTTTTCT CT

    Gene models with high sequence identity

    1. AT3G59630.1 [+] show detail - diphthamide synthesis DPH2 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Diphthamide synthesis, DHP2 7.6e-189
    HMMPanther Diphthamide synthesis, DPH1/DHP2 7.6e-189
    HMMTigr Diphthamide synthesis, DHP2 3e-60
    HMMTigr Diphthamide synthesis, DPH1/DHP2 1.1e-21
    HMMPfam Diphthamide synthesis, DPH1/DHP2 8.6e-24
    HMMPfam Diphthamide synthesis, DPH1/DHP2 3e-34

    See the detailed result >

    AT3G59630.1

    Model type
    Protein coding
    Short Description
    diphthamide synthesis DPH2 family protein
    Computational Description
    diphthamide synthesis DPH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Diphthamide synthesis, DPH1/DHP2 (InterPro:IPR002728), Diphthamide synthesis, DHP2 (InterPro:IPR010014); BEST Arabidopsis thaliana protein match is: diphthamide synthesis DPH2 family protein (TAIR:AT5G62030.1); Has 995 Blast hits to 948 proteins in 287 species: Archae - 127; Bacteria - 0; Metazoa - 243; Fungi - 308; Plants - 94; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR