F15146

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15146

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15146

Determination of introduced cDNA(s)

  • RAFL09-37-N16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-37-N16 - Resource: pda06169

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-37-N16 - full reading
    AAGTACAACA ATCAACTCTA AGTCTATTAT ATTCAAGTCT TTGTTTTAAC 
    CTAACAATGG CTTCAAATAA ACTTATTTCG ATTCTAGTTC TCGTAGTTAC
    ACTTTTACTC CAAGGTGATA ACAATTACGT CGTCGAAGCA CAACTCACGA
    CTAACTTCTA CTCAACCTCT TGCCCCAACC TCCTCTCCAC CGTCCAAACC
    GCCGTTAAAT CTGCCGTTAA CAGCGAGGCT CGAATGGGTG CATCTATCCT
    CCGTCTCTTC TTCCACGATT GCTTTGTCAA CGGATGCGAC GGTTCGATTC
    TACTAGACGA TACGTCAAGC TTCACAGGAG AACAAAACGC GGCTCCAAAC
    CGCAATTCAG CTCGTGGGTT TAATGTGATC GACAACATCA AATCAGCGGT
    TGAGAAAGCA TGTCCCGGGG TTGTGTCTTG TGCTGATATC TTAGCCATTG
    CTGCTAGAGA CTCCGTCGTA GCCCTTGGAG GACCGAACTG GAATGTGAAA
    GTAGGAAGAA GAGATGCAAG AACGGCGAGT CAAGCGGCAG CGAATAGTAA
    CATTCCGGCA CCGACTTCGA GTCTGAGCCA ACTCATTAGT AGTTTCAGTG
    CTGTTGGACT CTCCACCAGA GATATGGTTG CTCTCTCTGG CGCACACACG
    ATCGGACAAT CCCGTTGCAC GAACTTCCGA GCGAGAATCT ACAACGAGAC
    AAACATCAAT GCCGCCTTCG CCACGACACG TCAACGAACT TGCCCTAGAG
    CCTCCGGTTC CGGCGACGGA AACCTAGCTC CACTAGACGT CACCACGGCA
    GCTTCTTTCG ACAACAACTA CTTCAAGAAT CTCATGACTC AGAGAGGGCT
    CCTCCATTCC GACCAAGTGC TCTTCAACGG CGGCTCTACT GACTCCATCG
    TCCGTGGATA CAGCAACAAT CCGTCGAGCT TTAACTCTGA CTTCACGGCG
    GCGATGATAA AAATGGGTGA TATCAGCCCG TTGACTGGTA GTAGCGGTGA
    AATCCGCAAG GTTTGCGGGA GGACCAACTG ATTCAAGTCT ACTCCACGTG
    TCTTTTTCCT ATTGGATTTA CCTTTTATTA TTTGAGTTGG TGAGTATAAT
    AAAGATTGAT CTTCTCCAAA AAAATTCGAA GGTCCCTTTC AATGTTTTTT
    TTTTGTTTGC TTTGCTTTGT GTTGAAGTGT GTATTTCCGC ATTAAAAATC
    TAATGAAAAT TATTCCATTT GGAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT5G05340.1 [+] show detail - Peroxidase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Plant peroxidase 1.1e-67
    FPrintScan Plant peroxidase 1.1e-67
    FPrintScan Plant peroxidase 1.1e-67
    FPrintScan Plant peroxidase 1.1e-67
    FPrintScan Plant peroxidase 1.1e-67
    FPrintScan Plant peroxidase 1.1e-67
    FPrintScan Plant peroxidase 1.1e-67
    FPrintScan Plant peroxidase 1.1e-67
    FPrintScan Plant peroxidase 1.1e-67
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-33
    superfamily Haem peroxidase 1.6e-114
    Gene3D no description 1.5e-63
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    ProfileScan Haem peroxidase, plant/fungal/bacterial 78.447
    HMMPfam Haem peroxidase, plant/fungal/bacterial 2e-82

    See the detailed result >

    AT5G05340.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G58400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR