F15205

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15205

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15205

Determination of introduced cDNA(s)

  • RAFL06-89-E13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-89-E13 - Resource: pda09464

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-89-E13 - full reading
    CCCGACAACA ACAACCACTT CTCTTCCATT CCACAAGGAC CACAATCACT 
    TCAACCTTAA TCGAAATCTC CGATCGAGAA ATAGGAGAAT GACGACGCCT
    CCAGTTCTAT CTCTCGCTCT TCCTTCAGAT ACTGGTCGTG TTCTTAGTAT
    CCAATCCCAC ACTGTTCAGG GATATGTTGG TAACAAATCA GCTGTCTTTC
    CTCTTCAATT GTTGGGGTAT GATGTGGATC CAATCAACTC TGTACAATTC
    TCGAATCATA CAGGGTATCC TACATTTAAA GGACAGGTTT TGAATGGTCA
    GCAATTGTGT GATTTGATTG AAGGTCTTGA AGCAAACGAT TTGTTGTTCT
    ACACTCATGT ATTAACAGGT TATATTGGAT CAGTGTCATT CCTGGATACA
    ATTTTGGAGG TTATTAATAA GCTTCGCTCT GTAAACCCGA ATCTTACATA
    TGTATGTGAT CCGGTGATGG GTGATGAAGG AAAGTTGTAT GTGCCTGAAG
    AACTGGTACA TGTTTATCGT GAAAAGGTTG TTCCCTTGGC TTCTATGTTG
    ACTCCTAACC AGTTTGAGGC AGAGAAGTTA ACAGGACTAA GGATAAATTC
    TGAGGAAGAT GGCAGGGAAG CTTGTGCTAT TCTTCATGCA GCTGGTCCTT
    CAAAGGTTGT GATCACTAGC ATTACTATAG GAGGCATTCT ATTACTTATC
    GGAAGCCATC AGAAAGAAAA GGGTCTCAAG CCTGAGCAAT TCAAGATTTT
    GATACACAAA ATCCCTGCTT ATTTTACGGG AACAGGAGAT CTCATGACTG
    CTCTTCTACT TGGTTGGAGT AATAAATACC CTGACAACCT TGACAAAGCA
    GCCGAGCTTG CAGTTTCAAC GTTGCAGGCG CTTTTGCGAA GGACGCTTGA
    TGATTACAAA CGAGCTGGGT ATGATCCTAC CTCAAGCAGT TTGGAGATTA
    GATTGATACA AAGCCAGGAA GACATTCGCA ACCCGAAGGT CGAACTGAAA
    GCTGAAAGAT ACAGCTGAAG CAGGTGAAAA AATGTAACAT ATTTATCTGA
    AATAAGAAAA CATAGATGAT TTTGGGGATA CAATAATTAT GTTGCACGAT
    TCTTTTATGC ATATAAAAGA GTACAGACTT CAGAG

    Gene models with high sequence identity

    1. AT5G37850.1 [+] show detail - pfkB-like carbohydrate kinase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase 6.3e-75
    superfamily Ribokinase-like 2e-69
    HMMPfam Phosphomethylpyrimidine kinase type-1 4e-15
    HMMPanther PYRIDOXINE KINASE 1.5e-123
    Gene3D no description 2.6e-84

    See the detailed result >

    AT5G37850.1

    Model type
    Protein coding
    Short Description
    pfkB-like carbohydrate kinase family protein
    Curator Summary
    Encodes a pyridoxal kinase required for root hair development. Mutants are hypersensitive to Na+, K+ and Li+.
    Computational Description
    SALT OVERLY SENSITIVE 4 (SOS4); FUNCTIONS IN: pyridoxal kinase activity, kinase activity; INVOLVED IN: pyridoxine biosynthetic process, hyperosmotic salinity response, trichoblast differentiation, pyridoxal 5'-phosphate salvage; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase (InterPro:IPR004625), Phosphomethylpyrimidine kinase type-1 (InterPro:IPR013749); BEST Arabidopsis thaliana protein match is: thiamin biosynthesis protein, putative (TAIR:AT1G22940.1); Has 6182 Blast hits to 6179 proteins in 1931 species: Archae - 81; Bacteria - 5137; Metazoa - 195; Fungi - 190; Plants - 75; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR