F15205

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	epinastic (PATO:0000945) (Cauline leaf::Shape::epinastic)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) dark green (PATO:0001249) (Rosette leaf::Color::dark) decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	present in fewer numbers in organism (PATO:0001997) (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15205

Determination of introduced cDNA(s)

RAFL06-89-E13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-89-E13 - Resource: pda09464

full reading [+] show sequence

CCCGACAACA ACAACCACTT CTCTTCCATT CCACAAGGAC CACAATCACT 
TCAACCTTAA TCGAAATCTC CGATCGAGAA ATAGGAGAAT GACGACGCCT 
CCAGTTCTAT CTCTCGCTCT TCCTTCAGAT ACTGGTCGTG TTCTTAGTAT 
CCAATCCCAC ACTGTTCAGG GATATGTTGG TAACAAATCA GCTGTCTTTC 
CTCTTCAATT GTTGGGGTAT GATGTGGATC CAATCAACTC TGTACAATTC 
TCGAATCATA CAGGGTATCC TACATTTAAA GGACAGGTTT TGAATGGTCA 
GCAATTGTGT GATTTGATTG AAGGTCTTGA AGCAAACGAT TTGTTGTTCT 
ACACTCATGT ATTAACAGGT TATATTGGAT CAGTGTCATT CCTGGATACA 
ATTTTGGAGG TTATTAATAA GCTTCGCTCT GTAAACCCGA ATCTTACATA 
TGTATGTGAT CCGGTGATGG GTGATGAAGG AAAGTTGTAT GTGCCTGAAG 
AACTGGTACA TGTTTATCGT GAAAAGGTTG TTCCCTTGGC TTCTATGTTG 
ACTCCTAACC AGTTTGAGGC AGAGAAGTTA ACAGGACTAA GGATAAATTC 
TGAGGAAGAT GGCAGGGAAG CTTGTGCTAT TCTTCATGCA GCTGGTCCTT 
CAAAGGTTGT GATCACTAGC ATTACTATAG GAGGCATTCT ATTACTTATC 
GGAAGCCATC AGAAAGAAAA GGGTCTCAAG CCTGAGCAAT TCAAGATTTT 
GATACACAAA ATCCCTGCTT ATTTTACGGG AACAGGAGAT CTCATGACTG 
CTCTTCTACT TGGTTGGAGT AATAAATACC CTGACAACCT TGACAAAGCA 
GCCGAGCTTG CAGTTTCAAC GTTGCAGGCG CTTTTGCGAA GGACGCTTGA 
TGATTACAAA CGAGCTGGGT ATGATCCTAC CTCAAGCAGT TTGGAGATTA 
GATTGATACA AAGCCAGGAA GACATTCGCA ACCCGAAGGT CGAACTGAAA 
GCTGAAAGAT ACAGCTGAAG CAGGTGAAAA AATGTAACAT ATTTATCTGA 
AATAAGAAAA CATAGATGAT TTTGGGGATA CAATAATTAT GTTGCACGAT 
TCTTTTATGC ATATAAAAGA GTACAGACTT CAGAG

Gene models with high sequence identity

AT5G37850.1 [+] show detail - pfkB-like carbohydrate kinase family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase	6.3e-75
superfamily	Ribokinase-like	2e-69
HMMPfam	Phosphomethylpyrimidine kinase type-1	4e-15
HMMPanther	PYRIDOXINE KINASE	1.5e-123
Gene3D	no description	2.6e-84

See the detailed result >

AT5G37850.1

Model type: Protein coding
Short Description: pfkB-like carbohydrate kinase family protein
Curator Summary: Encodes a pyridoxal kinase required for root hair development. Mutants are hypersensitive to Na+, K+ and Li+.
Computational Description: SALT OVERLY SENSITIVE 4 (SOS4); FUNCTIONS IN: pyridoxal kinase activity, kinase activity; INVOLVED IN: pyridoxine biosynthetic process, hyperosmotic salinity response, trichoblast differentiation, pyridoxal 5'-phosphate salvage; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase (InterPro:IPR004625), Phosphomethylpyrimidine kinase type-1 (InterPro:IPR013749); BEST Arabidopsis thaliana protein match is: thiamin biosynthesis protein, putative (TAIR:AT1G22940.1); Has 6182 Blast hits to 6179 proteins in 1931 species: Archae - 81; Bacteria - 5137; Metazoa - 195; Fungi - 190; Plants - 75; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).
Link: InterPro Scan - TAIR