F15314

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15314

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15314

Determination of introduced cDNA(s)

  • RAFL09-66-H13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-66-H13 - Resource: pda08641

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-66-H13 - full reading 
    AGACTGAAAA AAATGGCGGC ATCATCATCT CATCTCTTCG CACTCCCTTC 
    GCCTGCTTCT CCGTTTCTAT CTGCACCAAA CCGGAATCGA GTTCGTGTTC 
    TTGCGAAATC ATGCCCGGAG AATCAGAGCT TCGACTCCAA CGATTCGGAT 
    TCTTCCTCAG AGACTACCCA CAAAGCCCAG GGAGATCAGA AATCAGTGTC 
    ACGGAGACAG TGGATGACGG CATGTGTGTG CGCATCTGCA GCTTTAATTA 
    GCAATTCTTA TACCTTTGTC TCTGTACAAA GCGCAGCCGC TTTAGACAAG 
    AAACCAGGAG GTTCATGTCG TAACTGCCAG GGCAGTGGTG CTGTTCTTTG 
    TGATATGTGT GGTGGTACAG GAAAATGGAA AGCTCTCAAC CGAAAACGTG 
    CGAAAGATGT ATATGAGTTT ACGGAATGTC CAAACTGTTA CGGTCGAGGT 
    AAGCTTGTTT GTCCGGTCTG TTTAGGTACA GGTTTACCAA ACAACAAAGG 
    CCTTCTTAGA AGGCCTGGTG CTCGTGAGCT ACTCGAAAAG ATGTACAATG 
    GTCGGCTTCT TCCTGATTCA TGAGAAGATT GTTACTGCAA ATATGATTTT 
    AAGCACAGAG CCAGTAGACA TGATGATAGA AGCGGATGAA AACTTACACA 
    TTGAGGATGC ATGGAAAGCT ATAGAAGAAT GTATCGAATT CAACATGTTT 
    TTATAATGCT GCTAGGTTTG TGTTGTAAAT TCTATAAACA TAAAACTTTC 
    CTTCTTCCCC ATACAGACTA GACGAATCAG TTTCGACTAA GATACTCACT 
    CACTCACCTA TGCATTTAGG CATATAGAAT CACACACTTT GATT

    Gene models with high sequence identity

    1. AT2G34860.1 [+] show detail - DnaJ/Hsp40 cysteine-rich domain superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Heat shock protein DnaJ, cysteine-rich domain 7.5e-09
    Gene3D Heat shock protein DnaJ, cysteine-rich domain 0.00028

    See the detailed result >

    AT2G34860.1

    Model type
    Protein coding
    Short Description
    DnaJ/Hsp40 cysteine-rich domain superfamily protein
    Computational Description
    embryo sac development arrest 3 (EDA3); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: megagametogenesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 773 Blast hits to 773 proteins in 260 species: Archae - 32; Bacteria - 427; Metazoa - 13; Fungi - 2; Plants - 175; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR