F15332

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15332

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15332

Determination of introduced cDNA(s)

  • RAFL09-06-N12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-06-N12 - Resource: pda05119

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-06-N12 - full reading
    ATCACACAGA TCCACACATC AAGAAACTAT TCAAAAATGG CTTTGCTTGT 
    AGAGAAAACC TCAAGTGGCC GTGAATACAA GGTCAAGGAC ATGTCCCAAG
    CCGACTTCGG CCGTCTCGAA ATCGAGCTAG CCGAAGTCGA AATGCCTGGA
    CTTGTCTCTT GCGTTACCGA ATTCGGACCA TCTCAGCCAC TCAAAGGAGC
    AAGAATCACC GGTTCTCTCC ACATGACGAT CCAAACCGCG GTTTTAATCG
    AAACCTTAAC CGCTCTCGGC GCTGAAGTCA GATGGTGTTC TTGCAACATC
    TTCTCCACTC AAGACCACGC CGCGGCCGCT ATTGCTCGTG ATTCCGCCGC
    GGTGTTCGCT TGGAAAGGTG AGACTCTTCA AGAATATTGG TGGTGTACAG
    AGAGAGCTCT TGACTGGGGT CCTGGAGGTG GTCCTGATCT CATCGTTGAT
    GACGGTGGTG ATGCTACACT GTTGATCCAT GAAGGAGTTA AAGCTGAAGA
    GATCTTTGCC AAGAATGGTA CGTTCCCTGA CCCGACCTCT ACTGATAATC
    CCGAGTTTCA GATCGTCCTG TCTATTATCA AAGACGGTCT TCAAGTTGAT
    CCCAAGAAGT ACCATAAGAT GAAGGAGAGA TTGGTTGGTG TCTCTGAGGA
    GACTACTACT GGTGTTAAGA GGCTTTATCA GATGCAGGAG ACTGGAGCTC
    TCTTGTTCCC TGCCATTAAC GTCAATGACT CTGTCACCAA GAGCAAGTTT
    GACAACTTGT ACGGATGCCG ACACTCGCTT CCCGATGGTC TCATGAGGGC
    TACTGATGTT ATGATTGCTG GAAAGGTTGC TGTTATCTGT GGTTATGGTG
    ATGTAGGAAA AGGTTGTGCT GCAGCAATGA AAACCGCGGG TGCTCGTGTC
    ATAGTGACTG AGATTGATCC AATCTGTGCT CTTCAGGCTC TTATGGAAGG
    TCTTCAAGTT CTGACCCTTG AGGATGTTGT CTCAGAAGCT GATATCTTCT
    GTACCACTAC TGGTAACAAA GATATTATTA TGGTTGATCA CATGAGGAAG
    ATGAAGAACA ATGCCATTGT CTGTAACATT GGTCATTTTG ACAATGAAAT
    CGACATGCTT GGACTTGAGA CCTACCCTGG TGTGAAACGT ATTACCATCA
    AGCCACAGAC CGATAGGTGG GTGTTTCCTG ATACCAACTC TGGCATCATT
    GTTCTAGCTG AAGGTCGTTT GATGAACTTG GGATGCGCCA CTGGACACCC
    GAGTTTCGTG ATGTCGTGCT CATTCACCAA CCAGGTGATT GCACAGCTTG
    AGCTCTGGAA CGAGAAGTCA AGCGGGAAGT ATGAGAAGAA GGTCTATGTT
    TTGCCTAAAC ACTTGGATGA GAAGGTAGCT GCACTTCACT TAGGCAAGCT
    TGGTGCAAGA CTCACCAAGC TTACCAAGGA CCAATCTGAC TATGTCAGCA
    TACCCGTTGA AGGTCCTTAC AAGCCTGTTC ACTACAGGTA CTGAGAGGAT
    AAAAGAGCCA AGCTTTGGTT CTTCGTTTGG TTTTCTGATT AAGCCGTTTA
    TTGGCAATTG TTTGAGTCGG ATTGGGTCTG GTTTGGTCGG AGAAATATGA
    GATATTGGTC TTCTGATGCG TGTGACCAAA TATTGGTATG AATAAGGGGT
    TGTTTTTGAT TTATGAGAGG CTGTTTTTTT GTTTTCTTCT TCTTCTATTT
    TATATATCTT CAACATAAAT TAGCTTATGC TTTACACT

    Gene models with high sequence identity

    1. AT3G23810.1 [+] show detail - S-adenosyl-l-homocysteine (SAH) hydrolase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam S-adenosyl-L-homocysteine hydrolase 1.9e-141
    HMMPfam S-adenosyl-L-homocysteine hydrolase, NAD binding 3.7e-83
    HMMTigr S-adenosyl-L-homocysteine hydrolase 4.6e-236
    PatternScan S-adenosyl-L-homocysteine hydrolase, conserved site 0
    PatternScan S-adenosyl-L-homocysteine hydrolase, conserved site 0
    HMMPIR S-adenosyl-L-homocysteine hydrolase 2e-252
    Gene3D no description 1.5e-132
    superfamily Formate/glycerate dehydrogenase catalytic dom 5.6e-113
    superfamily NAD(P)-binding domain 4.2e-46
    HMMPanther S-adenosyl-L-homocysteine hydrolase 0

    See the detailed result >

    AT3G23810.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-l-homocysteine (SAH) hydrolase 2
    Computational Description
    S-adenosyl-l-homocysteine (SAH) hydrolase 2 (SAHH2); FUNCTIONS IN: adenosylhomocysteinase activity; INVOLVED IN: one-carbon metabolic process; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosyl-L-homocysteine hydrolase (InterPro:IPR000043), S-adenosyl-L-homocysteine hydrolase, conserved site (InterPro:IPR020082), S-adenosyl-L-homocysteine hydrolase, NAD binding (InterPro:IPR015878); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-homocysteine hydrolase (TAIR:AT4G13940.1); Has 7939 Blast hits to 7933 proteins in 1466 species: Archae - 229; Bacteria - 2315; Metazoa - 640; Fungi - 145; Plants - 247; Viruses - 0; Other Eukaryotes - 4363 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR