F15442

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15442

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15442

Determination of introduced cDNA(s)

  • RAFL09-68-G23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-68-G23 - Resource: pda06618

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-68-G23 - full reading 
    GATGAAACTT GTCTCCTCCG GCCAACCTTA ACCCTTAAGC GAACGGTGTT 
    CCTTTGCGGA TTGCGATCGT TCCGTCGATC CCTTCATCGC CCGATCTAAA 
    TCTCTAATCG TGTCGGAGAT TAAAAGCAGA GGTTTTGTGG TGAATCATGT 
    CTGATGTCCC TTCTTGTTCT AGCGGTAATG ATACAAACAA CAATGATTCG 
    AGTAACTTCG AATGTAACAT CTGCTTAGAC TTGGCTCAAG ATCCTATTGT 
    CACTCTCTGT GGTCACTTGT TCTGTTGGCC TTGTTTATAC AAATGGCTCC 
    ATCTCCATTC TCAATCTAAG GACTGTCCTG TTTGCAAAGC CGTGATCGAA 
    GAAGACAGAT TGGTTCCTTT GTACGGTAGA GGTAAATCGT CTGCTGACCC 
    TCGGTCCAAG TCCATTCCGG GTCTCGAAGT GCCTAACCGT CCATCGGGAC 
    AGAGACCCGA AACTGCACAA CCTCCTGATC CTAACCATGG TTTTGCTCAT 
    CATCATGGGT TTGGAGGGTT CATGGGAGGT TTTGCTGCTC CGATGGCGAG 
    TGCGCGGTTC GGGAATGTTA CATTGTCTGC AGCGTTTGGC GGTTTGATTC 
    CTTCTTTGTT CAACCTCCAT TTCCATGGTT TCCCTGATGC AGCCATGTAT 
    GGAGCTGCTG CTTCTGGCGG CTTCCCTCAC GGTTTCTCGA ATCCGTTTCA 
    TGGAGGACAC TCGCATATGC ATAGTTACCA GCGGCACACG GGTCGACAAG 
    GACAACAAGA CCATCACTTG AGGATATTGT TACTCATTGT TTTCGTCGTT 
    GTTGTGTTTT CTCTCTTCTT GAGCTAGTGA GGAAATCGAT TTAGCTAACT 
    GTATTTCGCT TTTTATTCTA GATTTTATTG CATAAAAACA TGGGAAAATA 
    TGTGCTGTGA GTTGGCTTGT AAACTGCTAC TTTAGCAAAT TGTTCATATA 
    TTAATAAAAC CTGTCGGATT CTCC

    Gene models with high sequence identity

    1. AT1G19310.1 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 5.1e-16
    HMMPanther RNF5 2.9e-70
    superfamily RING/U-box 3.1e-17
    HMMPfam Zinc finger, C3HC4 RING-type 4.5e-07
    HMMSmart Zinc finger, RING-type 7.6e-09
    ProfileScan Zinc finger, RING-type 13.478
    PatternScan Zinc finger, RING-type, conserved site 0

    See the detailed result >

    AT1G19310.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G23780.1); Has 4673 Blast hits to 4665 proteins in 300 species: Archae - 0; Bacteria - 6; Metazoa - 2731; Fungi - 589; Plants - 822; Viruses - 25; Other Eukaryotes - 500 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR