F15507

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15507

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15507

Determination of introduced cDNA(s)

  • RAFL15-47-M19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL15-47-M19 - Resource: pda13324

    full reading [+] show sequence

    Nucleotide sequence: RAFL15-47-M19 - full reading
    AGACCCTCAA GGTATCTTCC AGAAGCAACG AGAAGACCTG CAAGAGAAAA 
    TTTTCAGATT CAACTATGGC GGACGAAGCA AAAGCTAAAG GAAACGCAGC
    TTTCTCCTCC GGTGACTTCA ATTCCGCCGT TAATCACTTC ACCGACGCAA
    TCAACCTAAC ACCAACCAAT CACGTTCTCT TCTCAAACCG TTCCGCTGCT
    CACGCATCGC TTAATCACTA CGACGAAGCT CTCTCAGACG CGAAGAAGAC
    TGTTGAACTT AAACCAGATT GGGGAAAAGG TTATAGCCGT CTCGGTGCTG
    CTCACTTAGG TCTAAATCAG TTCGATGAAG CCGTGGAGGC GTATTCGAAA
    GGGCTTGAGA TTGATCCAAG TAACGAAGGT TTGAAATCAG GTTTAGCTGA
    TGCGAAAGCT TCTGCGTCTA GGTCACGCGC TTCCGCGCCC AATCCGTTTG
    GTGATGCTTT TCAGGGACCG GAGATGTGGT CGAAATTGAC GGCGGATCCT
    TCTACTAGAG GGTTATTGAA ACAGCCTGAT TTTGTTAATA TGATGAAGGA
    GATTCAGAGG AACCCTAGTA ATCTTAATCT TTATTTGCAA GATCAGAGAG
    TTATGCAAGC TCTTGGAGTT TTGTTGAATA TTCAAATCAG GACTCAACAG
    GCTGGTGATG ATATGGAGAT TGGTGAGGAA GAGATGGCTG TGCCTTCTAG
    GAAGGAGCCT GAGGTAGAGA AGAAACGAAA ACCTGAGCCT GAGCCTGAGC
    CTGAGCCGGA GTTTGGAGAA GAGAAGCAGA AGAAGCTTAA AGCTCAGAAG
    GAGAAAGAGT TGGGGAATGC TGCGTATAAG AAGAAGGACT TCGAAACTGC
    AATCCAGCAT TACTCTACAG CTATGGAGAT TGATGATGAA GATATCTCTT
    ATATCACTAA TCGTGCTGCT GTTCATCTAG AGATGGGAAA GTATGATGAG
    TGTATCAAGG ATTGTGATAA GGCTGTTGAA AGGGGTAGAG AGCTTAGGTC
    TGATTACAAG ATGGTGGCTA AAGCTTTGAC TAGGAAAGGA ACTGCTTTAG
    GGAAGATGGC TAAAGTCTCG AAAGACTATG AACCTGTGAT TCAGACTTAC
    CAGAAAGCTA TTACGGAGCA TCGTAACCCT GAAACATTGA AGAGACTGAA
    TGAGGCAGAG AGAGCAAAGA AAGAGTTGGA GCAGCAAGAG TACTATGATC
    CTAATATCGG TGATGAGGAG CGTGAGAAAG GTAATGACTT TTTTAAGGAG
    CAAAAGTATC CTGATGCTGT GAGACATTAC ACTGAAGCGA TCAAGAGGAA
    TCCAAAAGAC CCGAGAGCAT ATAGCAACCG GGCTGCATGT TACACTAAAC
    TGGGGGCAAT GCCCGAAGGA TTAAAAGATG CAGAGAAATG TATCGAGCTC
    GATCCAACAT TCTTAAAGGG ATACAGTAGA AAAGGTGCAG TCCAGTTCTT
    CATGAAGGAG TATGACAATG CAATGGAAAC GTACCAGAAG GGTCTCGAAC
    ATGATCCTAA TAACCAGGAA CTTCTTGATG GTGTTAAAAG ATGTGTACAA
    CAGATAAACA AGGCAAACCG TGGCGACCTT ACTCCTGAGG AATTGAAAGA
    AAGACAGGCT AAGGGAATGC AAGACCCAGA AATTCAGAAC ATTCTCACAG
    ATCCTGTAAT GAGACAGGTA CTGTCTGATC TCCAGGAGAA TCCAGCAGCA
    GCACAAAAGC ACATGCAGAA CCCAATGATC ATGAACAAAA TCCAAAAGCT
    TATCAGCTCA GGAATCGTCC AGATGAAATA AACGAAGCCA AGACATTGAT
    TTCGATTTTG CTGAGTCATT ACTCTTTTAT AACTCCAAAC ACTAAGATCG
    AATTCTTCTC ATTTTTCAGA CTTTTCTGAT ATATCAATTT TTCTTTCTTT
    CTCATACCAA AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT1G62740.1 [+] show detail - stress-inducible protein, putative
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Tetratricopeptide repeat 0.47
    HMMSmart Tetratricopeptide repeat 12
    HMMSmart Tetratricopeptide repeat 0.00000019
    HMMSmart Heat shock chaperonin-binding 0.0000000017
    HMMSmart Tetratricopeptide repeat 0.0016
    HMMSmart Tetratricopeptide repeat 0.0035
    HMMSmart Tetratricopeptide repeat 82
    HMMSmart Tetratricopeptide repeat 0.26
    HMMSmart Tetratricopeptide repeat 0.00012
    HMMSmart Tetratricopeptide repeat 0.000021
    HMMSmart Heat shock chaperonin-binding 0.0000000000099
    ProfileScan Tetratricopeptide repeat 9.647
    ProfileScan Tetratricopeptide repeat 7.552
    ProfileScan Tetratricopeptide repeat 12.685
    ProfileScan Tetratricopeptide repeat 9.647
    ProfileScan Tetratricopeptide repeat 5.576
    ProfileScan Tetratricopeptide repeat 5.841
    ProfileScan Tetratricopeptide repeat 8.703
    ProfileScan Tetratricopeptide repeat 8.437
    ProfileScan Tetratricopeptide repeat 10.768
    ProfileScan Tetratricopeptide repeat-containing 25.733
    ProfileScan Tetratricopeptide repeat-containing 31.223
    Gene3D Tetratricopeptide-like helical 3.3e-33
    Gene3D Tetratricopeptide-like helical 1.8e-46
    HMMPanther STRESS-INDUCED-PHOSPHOPROTEIN 1 (STI1) (HSC70 0
    HMMPanther TPR REPEAT CONTAINING PROTEIN 0
    superfamily TPR-like 9.4e-46
    superfamily TPR-like 2.2e-28
    Coil coiled-coil 0
    HMMPfam Tetratricopeptide TPR-1 0.0000000088
    HMMPfam Tetratricopeptide TPR-1 0.00006
    HMMPfam Tetratricopeptide TPR-1 0.00002
    HMMPfam Tetratricopeptide TPR-1 0.000085
    HMMPfam Tetratricopeptide TPR-1 0.00000089
    HMMPfam Tetratricopeptide TPR-1 0.00000035

    See the detailed result >

    AT1G62740.1

    Model type
    Protein coding
    Short Description
    stress-inducible protein, putative
    Computational Description
    stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to cadmium ion, response to stress; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G12270.1); Has 44605 Blast hits to 18649 proteins in 1479 species: Archae - 1696; Bacteria - 14533; Metazoa - 9820; Fungi - 2891; Plants - 3854; Viruses - 4; Other Eukaryotes - 11807 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR