F15507

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15507

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15507

Determination of introduced cDNA(s)

  • RAFL15-47-M19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL15-47-M19 - Resource: pda13324

    full reading [+] show sequence

    Nucleotide sequence: RAFL15-47-M19 - full reading 
    AGACCCTCAA GGTATCTTCC AGAAGCAACG AGAAGACCTG CAAGAGAAAA 
    TTTTCAGATT CAACTATGGC GGACGAAGCA AAAGCTAAAG GAAACGCAGC 
    TTTCTCCTCC GGTGACTTCA ATTCCGCCGT TAATCACTTC ACCGACGCAA 
    TCAACCTAAC ACCAACCAAT CACGTTCTCT TCTCAAACCG TTCCGCTGCT 
    CACGCATCGC TTAATCACTA CGACGAAGCT CTCTCAGACG CGAAGAAGAC 
    TGTTGAACTT AAACCAGATT GGGGAAAAGG TTATAGCCGT CTCGGTGCTG 
    CTCACTTAGG TCTAAATCAG TTCGATGAAG CCGTGGAGGC GTATTCGAAA 
    GGGCTTGAGA TTGATCCAAG TAACGAAGGT TTGAAATCAG GTTTAGCTGA 
    TGCGAAAGCT TCTGCGTCTA GGTCACGCGC TTCCGCGCCC AATCCGTTTG 
    GTGATGCTTT TCAGGGACCG GAGATGTGGT CGAAATTGAC GGCGGATCCT 
    TCTACTAGAG GGTTATTGAA ACAGCCTGAT TTTGTTAATA TGATGAAGGA 
    GATTCAGAGG AACCCTAGTA ATCTTAATCT TTATTTGCAA GATCAGAGAG 
    TTATGCAAGC TCTTGGAGTT TTGTTGAATA TTCAAATCAG GACTCAACAG 
    GCTGGTGATG ATATGGAGAT TGGTGAGGAA GAGATGGCTG TGCCTTCTAG 
    GAAGGAGCCT GAGGTAGAGA AGAAACGAAA ACCTGAGCCT GAGCCTGAGC 
    CTGAGCCGGA GTTTGGAGAA GAGAAGCAGA AGAAGCTTAA AGCTCAGAAG 
    GAGAAAGAGT TGGGGAATGC TGCGTATAAG AAGAAGGACT TCGAAACTGC 
    AATCCAGCAT TACTCTACAG CTATGGAGAT TGATGATGAA GATATCTCTT 
    ATATCACTAA TCGTGCTGCT GTTCATCTAG AGATGGGAAA GTATGATGAG 
    TGTATCAAGG ATTGTGATAA GGCTGTTGAA AGGGGTAGAG AGCTTAGGTC 
    TGATTACAAG ATGGTGGCTA AAGCTTTGAC TAGGAAAGGA ACTGCTTTAG 
    GGAAGATGGC TAAAGTCTCG AAAGACTATG AACCTGTGAT TCAGACTTAC 
    CAGAAAGCTA TTACGGAGCA TCGTAACCCT GAAACATTGA AGAGACTGAA 
    TGAGGCAGAG AGAGCAAAGA AAGAGTTGGA GCAGCAAGAG TACTATGATC 
    CTAATATCGG TGATGAGGAG CGTGAGAAAG GTAATGACTT TTTTAAGGAG 
    CAAAAGTATC CTGATGCTGT GAGACATTAC ACTGAAGCGA TCAAGAGGAA 
    TCCAAAAGAC CCGAGAGCAT ATAGCAACCG GGCTGCATGT TACACTAAAC 
    TGGGGGCAAT GCCCGAAGGA TTAAAAGATG CAGAGAAATG TATCGAGCTC 
    GATCCAACAT TCTTAAAGGG ATACAGTAGA AAAGGTGCAG TCCAGTTCTT 
    CATGAAGGAG TATGACAATG CAATGGAAAC GTACCAGAAG GGTCTCGAAC 
    ATGATCCTAA TAACCAGGAA CTTCTTGATG GTGTTAAAAG ATGTGTACAA 
    CAGATAAACA AGGCAAACCG TGGCGACCTT ACTCCTGAGG AATTGAAAGA 
    AAGACAGGCT AAGGGAATGC AAGACCCAGA AATTCAGAAC ATTCTCACAG 
    ATCCTGTAAT GAGACAGGTA CTGTCTGATC TCCAGGAGAA TCCAGCAGCA 
    GCACAAAAGC ACATGCAGAA CCCAATGATC ATGAACAAAA TCCAAAAGCT 
    TATCAGCTCA GGAATCGTCC AGATGAAATA AACGAAGCCA AGACATTGAT 
    TTCGATTTTG CTGAGTCATT ACTCTTTTAT AACTCCAAAC ACTAAGATCG 
    AATTCTTCTC ATTTTTCAGA CTTTTCTGAT ATATCAATTT TTCTTTCTTT 
    CTCATACCAA AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT1G62740.1 [+] show detail - stress-inducible protein, putative
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Tetratricopeptide repeat 0.47
    HMMSmart Tetratricopeptide repeat 12
    HMMSmart Tetratricopeptide repeat 1.9e-07
    HMMSmart Heat shock chaperonin-binding 1.7e-09
    HMMSmart Tetratricopeptide repeat 0.0016
    HMMSmart Tetratricopeptide repeat 0.0035
    HMMSmart Tetratricopeptide repeat 82
    HMMSmart Tetratricopeptide repeat 0.26
    HMMSmart Tetratricopeptide repeat 0.00012
    HMMSmart Tetratricopeptide repeat 2.1e-05
    HMMSmart Heat shock chaperonin-binding 9.9e-12
    ProfileScan Tetratricopeptide repeat 9.647
    ProfileScan Tetratricopeptide repeat 7.552
    ProfileScan Tetratricopeptide repeat 12.685
    ProfileScan Tetratricopeptide repeat 9.647
    ProfileScan Tetratricopeptide repeat 5.576
    ProfileScan Tetratricopeptide repeat 5.841
    ProfileScan Tetratricopeptide repeat 8.703
    ProfileScan Tetratricopeptide repeat 8.437
    ProfileScan Tetratricopeptide repeat 10.768
    ProfileScan Tetratricopeptide repeat-containing 25.733
    ProfileScan Tetratricopeptide repeat-containing 31.223
    Gene3D Tetratricopeptide-like helical 3.3e-33
    Gene3D Tetratricopeptide-like helical 1.8e-46
    HMMPanther STRESS-INDUCED-PHOSPHOPROTEIN 1 (STI1) (HSC70 0
    HMMPanther TPR REPEAT CONTAINING PROTEIN 0
    superfamily TPR-like 9.4e-46
    superfamily TPR-like 2.2e-28
    Coil coiled-coil 0
    HMMPfam Tetratricopeptide TPR-1 8.8e-09
    HMMPfam Tetratricopeptide TPR-1 6e-05
    HMMPfam Tetratricopeptide TPR-1 2e-05
    HMMPfam Tetratricopeptide TPR-1 8.5e-05
    HMMPfam Tetratricopeptide TPR-1 8.9e-07
    HMMPfam Tetratricopeptide TPR-1 3.5e-07

    See the detailed result >

    AT1G62740.1

    Model type
    Protein coding
    Short Description
    stress-inducible protein, putative
    Computational Description
    stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to cadmium ion, response to stress; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G12270.1); Has 44605 Blast hits to 18649 proteins in 1479 species: Archae - 1696; Bacteria - 14533; Metazoa - 9820; Fungi - 2891; Plants - 3854; Viruses - 4; Other Eukaryotes - 11807 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR