F15608

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15608

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15608

Determination of introduced cDNA(s)

  • RAFL09-12-E16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-12-E16 - Resource: pda01764

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-12-E16 - full reading
    GACTCTCTCC TCTTTTGTGC TCCCAAACCA AACATAACAC TCACAATTTA 
    ACTCTCTCTG TCTCTCTCTC ATATCTCTCA CTTCTTCTCT TTCTTTTTAA
    GTCCCCAAAA TAACCTCGAG ATCGATGGAC TCAAATCTGT TCATAACTCC
    CACTTCTTCT CTCAAATCCC AAGCCTTGGT CTCTTCATCA TCCTAACTAT
    ATAAGAAAAA GAAAAAACAA CGTAAAGTTT CTGCCATAAA TCATGAGACC
    AATATTAGAC CTCGAAATTG AAGCTTCATC GGGCAGTAGT AGCAGCCAAG
    TGGCCTCAAA CTTGTCTCCG GTTGGGGAAG ATTACAAACC AATCTCGCTG
    AATCTTAGCC TCAGTTTCAA CAACAACAAC AACAATAATC TGGATCTTGA
    ATCATCGTCT TTGACGCTGC CACTTTCGAG CACGAGTGAG AGTAGTAACC
    CGGAGCAGCA GCAGCAACAA CAACCATCTG TATCAAAGAG AGTCTTCTCT
    TGTAACTACT GCCAAAGGAA GTTCTATAGC TCTCAAGCGC TAGGTGGTCA
    CCAAAACGCT CACAAACGTG AGAGAACACT CGCCAAACGC GCTATGCGTA
    TGGGTCTTGC TGGGGTCTTC CCCGGTAGAG GATCAAGTAG CAATTATGCG
    GCTGCTGCCA CAGCAGCCGC TCTCTCGTGT TTGCCGCTTC ACGGAAGCGG
    AAACGGGAAC ATGACATCGT TCAGGACTTT GGGAATCCGG GCACATTCCT
    CGGCGCACGA CGTCAGCATG ACAAGGCAGA CACCAGAAAC ACTTATTAGA
    AACATTGCCA GGTTCAACCA GGGGTATTTC GGTAATTGTA TACCTTTTTA
    CGTGGAGGAC GACGAGGCCG AGATGCTCTG GCCGGGGAGT TTCCGGCAAG
    CTACGAATGC GGTTGCGGTT GAAGCGGGTA ATGATAATTT AGGTGAAAGA
    AAAATGGATT TCTTGGACGT CAAGCAAGCG ATGGATATGG AAAGTTCTCT
    TCCAGATCTA ACCTTGAAGC TTTGAGCTTT CGTTTTTTTT GTTTTTTTTT
    TTGCTGAATT TGGATTCTTA ATTTGGTGCA TCAGCTTCAT AACTCTATTA
    TGTACAGTGA GAGTTTCACA AACC

    Gene models with high sequence identity

    1. AT1G66140.1 [+] show detail - zinc finger protein 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Zinc finger, C2H2-type 0
    superfamily C2H2 and C2HC zinc fingers 4.6e-07
    ProfileScan Zinc finger, C2H2-type 11.427
    HMMPanther WILMS TUMOR, WT1 0.00057
    HMMPanther EARLY GROWTH RESPONSE PROTEIN 0.00057

    See the detailed result >

    AT1G66140.1

    Model type
    Protein coding
    Short Description
    zinc finger protein 4
    Curator Summary
    Encodes a zinc finger protein containing only a single zinc finger.
    Computational Description
    zinc finger protein 4 (ZFP4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 7 (TAIR:AT1G24625.1); Has 1119 Blast hits to 1118 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 4; Plants - 1103; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR