F15614

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15614

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15614

Determination of introduced cDNA(s)

  • RAFL09-65-H05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-65-H05 - Resource: pda08617

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-65-H05 - full reading 
    ACTACTGTCA TTTAGCCTGC AAAGCCCACA AACAAAGGGC TACACAAGTC 
    TTCCTTCTCT CTCTCCCTCT TCCTCTCTTT AGATGGAATA ATGGATCAAT 
    GCTTGTAAAG GTTTGAAATT TGATCAAGTT TTGAAGAAGC AAATTGAAAA 
    AGAAAAGAAA AGAGAAGACA TGGAGGTGGA GAAGAGGATT GTAGTGAATG 
    GAGGAATGAA ATTGCCAATA GGATACAGAT TTCACCCAAC CGAGCAAGAG 
    CTTATCCTTC ATTACTTGCT CCCAAAGGCC TTTGCTTCTC CTTTGCCTTC 
    CTCCATCATC CCTGTCTTTG ACCTCTTCTT CTCTCATCCT CTTAGTTTCC 
    CAGGGGACCA AAAGGAGAAG CAGAGGTACT TCTTTTGCAA GAAGAGAGAA 
    GTGTCAAGTA ATGAGCATAG AATCAAGATT TCCTCTGGTG ATGGTTATTG 
    GAAACCTATT GGTAAAGAGA GACCAATCAT TGCCTGTGGT AAAACATTTG 
    GGATTAGAAG AACACTTGCT TTCTATGAAA CAAACAAGTC TTCTTCTTAT 
    TGCAACAAAA CTAGATGGAG CATGACAGAG TATTGTCTTG CGGGATTTGC 
    GTCGGCTAAG GTGTCTGGAG AATGGGCAGT GTACAATGTT TATGAGAGGA 
    AAGGCTCAAA AGGAAGAAAA CAGAGGAAAT CAAGAGAGGG AGATGATGAA 
    GAATTGAGAT GCATCGACCA TTTTACGGTT GGGTCAAATC ATGAAACCGG 
    TCCACCACCG CCTTCTCCTC CTACCTCAGC TGATGAGTAA TATATATATC 
    TCATAGGAGA CGTTGAGATT GTGACAAGCT CCTAAACCCT AACCTACTAT 
    TCCACTTACG TTTCTGTCAA GCTATTTAAA AAATTTCAAC GTCTTGATTT 
    ATTTGTTAGC GAAGTAAGTA AAGTAACATG GTTCTAGGGG AGCTCATTTT 
    GATCTGAAAC TGTTGAATTG TATGAGTTGA GATTTGCACT TTTGTTGGGC 
    AAAACCAAAT ATATGTCAAA CTTGTTGATT ATTTTTACTT GAAGGTATTT 
    TAAACT

    Gene models with high sequence identity

    1. AT5G14000.1 [+] show detail - NAC domain containing protein 84
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily No apical meristem (NAM) protein 1.9e-41
    HMMPfam No apical meristem (NAM) protein 2.4e-30
    ProfileScan No apical meristem (NAM) protein 36.989

    See the detailed result >

    AT5G14000.1

    Model type
    Protein coding
    Short Description
    NAC domain containing protein 84
    Computational Description
    NAC domain containing protein 84 (NAC084); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 83 (TAIR:AT5G13180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR