F15628

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15628

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15628

Determination of introduced cDNA(s)

  • RAFL06-08-I23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-08-I23 - Resource: pda02894

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-08-I23 - full reading 
    GCATAACAAA TTTAGAGCGA GCAATAATGA GGGTTTCTCA ATCTCTAATC 
    CCTTTTGCCA TAATTGCTTT GGTCCTTTCC TTTGTCAATG CTTATGATCC 
    AAGTCCACTC CAAGACTTCT GTGTTGCCAT TGATGACCTA AAAGGCGTTT 
    TTGTGAATGG TAGGTTTTGT AAAGACCCGG AGCGAGTCGA TGCAAAAGAT 
    TTTTTCTTCT CAGGTCTCAA TGTGCCCGGG AACACCAATA ATCAAGTTGG 
    CTCTAATGTG ACCACTGTTA ATGTTGATCA GATCCCCGGG CTAAACACCA 
    TGGGAATATC ATTGGTCCGC ATAGACTACG CACCGCATGG CCAAAATCCA 
    CCTCACACGC ACCCTCGTGG CTCAGAGATC CTTGTCCTTG TCGAAGGAAC 
    ATTATACGTC GGTTTTGTCT CTTCCAATCA AGATAACAAC CGGTTATTCG 
    CCAAAGTATT GCACCCCGGT GATGTTTTTG TGTTCCCCAT AGGAATGATC 
    CATTTTCAGT TAAATATCGG GAAAATTCCA GCAATTGCTT TTGCGGGATT 
    GAGTAGCCAG AACGCTGGTG TTATCACAAT TGCAAACACT GTGTTCGGGT 
    CAAACCCTCC GATTTATCCA GAGCTTCTTG CCAGGGCGTT CCAGTTGGAT 
    GCAAATGTTG TCAAAGAACT TCAAGCCAAG TTTGGGTCCA TATGAACTGA 
    TCATCTAAGT CGTTTAAGAG TGTTTATCAT TGAAACACAA ATTAAAGGAA 
    TACACTACTA TGAAATATTT ATGTAACAAA GTAAAAATGG CTTATGTACC 
    TATTTCTATA TTATAATATA ACAACTTTAA T

    Gene models with high sequence identity

    1. AT5G39130.1 [+] show detail - RmlC-like cupins superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D RmlC-like jelly roll fold 8e-80
    superfamily Cupin, RmlC-type 2e-54
    PatternScan Germin, manganese binding site 0
    HMMSmart Cupin 1 2e-27
    FPrintScan Germin 2e-25
    FPrintScan Germin 2e-25
    FPrintScan Germin 2e-25
    HMMPfam Cupin 1 6.8e-28

    See the detailed result >

    AT5G39130.1

    Model type
    Protein coding
    Short Description
    RmlC-like cupins superfamily protein
    Computational Description
    RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 2 (TAIR:AT5G39190.1); Has 1495 Blast hits to 1489 proteins in 85 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 27; Plants - 1451; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR