F15713

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15713

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15713

Determination of introduced cDNA(s)

  • RAFL09-27-M17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-27-M17 - Resource: pda17677

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-27-M17 - full reading
    GATTGATGTT CAGTGAACTT GCACCAAACT TCACTTCTTC TATACTTCTT 
    CATAGCCACA AACTCAGTTC TTTGCAAGAA ACACAAACTT AAGTATTCAA
    AATATCGTCA TCATGTTCTC AAGATTCCAT GCTCTGTTTC TTCTCCTTGT
    TCTTTCAGTA AGAACATATA AATGTGTATC TTCATCTTCT TCTTCTTCTT
    CTTCTTTCTC ATTCTCTTCA TTTTCTTCTT CGTCTTCTTC TCAAACTCTT
    GTCTTGCCTC TAAAGACCCG AATAACCCCA ACGGATCATC GACCCACCGA
    CAAACTTCAT TTCCACCACA ACGTCACTCT CACCGTTACT CTCACCGTCG
    GTACTCCTCC TCAAAACATC TCCATGGTCA TTGACACTGG CAGTGAACTC
    TCCTGGCTTC GTTGCAACCG TTCCTCAAAC CCAAACCCGG TTAACAATTT
    TGACCCGACC CGTTCCTCCT CTTATTCCCC AATCCCCTGT TCCTCACCCA
    CTTGTCGTAC CCGGACCCGA GACTTCCTCA TACCCGCTTC TTGCGATTCA
    GACAAACTCT GCCACGCAAC TCTATCCTAC GCCGACGCTT CCTCCTCCGA
    AGGTAACCTC GCCGCCGAGA TTTTCCACTT CGGAAACTCC ACCAACGACT
    CCAATCTCAT TTTCGGGTGT ATGGGTTCCG TATCCGGATC CGACCCGGAA
    GAAGATACCA AAACAACTGG GTTATTGGGT ATGAACCGTG GTTCCCTCTC
    TTTTATCTCT CAAATGGGTT TCCCCAAATT CTCTTATTGC ATCTCCGGCA
    CCGACGACTT CCCGGGGTTT CTTCTCCTCG GCGACTCTAA CTTCACGTGG
    TTAACGCCGT TAAATTACAC GCCGTTAATT CGTATCTCTA CGCCGTTACC
    TTACTTCGAC CGTGTAGCTT ACACCGTCCA GCTCACGGGT ATTAAAGTTA
    ACGGTAAGCT TTTACCCATC CCTAAATCGG TTCTCGTACC GGATCATACC
    GGTGCTGGTC AAACCATGGT TGATTCCGGT ACTCAGTTTA CTTTCCTGCT
    TGGACCGGTT TACACCGCAC TTCGATCCCA TTTCTTAAAC CGGACAAACG
    GAATCTTAAC GGTTTACGAA GACCCAGATT TTGTTTTCCA AGGAACCATG
    GATTTGTGTT ATCGGATTTC ACCGGTTCGT ATACGGTCCG GAATTCTCCA
    CCGTTTACCA ACAGTTTCTC TGGTTTTCGA AGGAGCCGAG ATAGCGGTTT
    CGGGTCAGCC GCTATTGTAC CGAGTCCCGC ATCTCACGGT TGGAAACGAT
    TCGGTTTATT GTTTCACATT TGGAAACTCC GACCTTATGG GAATGGAGGC
    TTACGTGATT GGACATCATC ATCAGCAGAA CATGTGGATC GAATTTGATC
    TACAAAGATC AAGAATCGGT TTAGCTCCGG TAGAATGTGA TGTATCGGGT
    CAGAGACTCG GAATCGGATC GTAAACCATA GATAACCAGT GTGTAATTAT
    AGTTTTTTGC CTACGTAGAA ATGGTTTCTC TAGTAGAAAG GTATGCACGT
    GACTACAATG AGATTTGTGT TACCGACACG AGCGGGTGTG TAATAACTTC
    GAGTTTGGTA GTAGTTAGTT AGTTGTCTCT GTTTGCTTTT GACATGGTCT
    TTTCTTTGCG TAATTAATTT TTAGCTGAGA GTTATATCAA AAAAAAAA

    Gene models with high sequence identity

    1. AT5G02190.1 [+] show detail - Eukaryotic aspartyl protease family protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Peptidase aspartic, catalytic 3.6e-31
    superfamily Peptidase aspartic 1.2e-83
    HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 1e-99
    HMMPanther Peptidase A1 1e-99
    HMMPfam Peptidase A1 2.4e-12
    PatternScan Peptidase aspartic, active site 0

    See the detailed result >

    AT5G02190.1

    Model type
    Protein coding
    Short Description
    Eukaryotic aspartyl protease family protein
    Curator Summary
    encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage.
    Computational Description
    PROMOTION OF CELL SURVIVAL 1 (PCS1); CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT2G39710.1); Has 2066 Blast hits to 2053 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 96; Plants - 1822; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR