F15716

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	epinastic (PATO:0000945) (Cauline leaf::Shape::epinastic)
	stem (PO:0009047)	desaturated green (PATO:0001272) (Stem::Color::pale) abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15716

Determination of introduced cDNA(s)

RAFL04-17-L07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-L07 - Resource: pda00648

full reading [+] show sequence

ACTACGATAG TTTTCTTCAG CAATCACACT CTCTCTTTGT TCGAGTACCA 
ACAATGGCCC TTCAAGCTGC TTCTTTGGTC TCCTCTGCTT TCTCTGTTCG 
CAAAGATGCG AAGTTGAATG CTTCTTCATC ATCTTTCAAG GACTCGAGTC 
TTTTTGGTGC CTCCATTACC GACCAAATCA AATCCGAACA TGGATCTTCC 
TCGTTAAGAT TCAAGAGAGA ACAGAGCTTA AGGAATCTAG CAATTCGAGC 
CCAAACCGCT GCGACTTCAA GCCCTACAGT TACAAAATCC GTGGACGGCA 
AGAAAACGTT GAGGAAAGGA AATGTGGTGG TCACTGGAGC CTCGTCTGGG 
TTAGGTCTAG CCACGGCTAA AGCTCTAGCT GAGACAGGGA AATGGAACGT 
GATAATGGCG TGCAGAGACT TCCTTAAAGC CGAGAGAGCT GCTAAATCCG 
TAGGGATGCC TAAAGACAGC TACACAGTGA TGCATTTAGA CTTAGCCTCG 
TTGGACAGCG TGAGACAGTT TGTTGATAAT TTCAGGAGAA CAGAGACGCC 
TCTCGATGTT TTGGTCTGCA ATGCTGCGGT TTATTTCCCG ACAGCTAAAG 
AGCCTACTTA CAGTGCTGAA GGGTTTGAGC TTAGTGTTGC GACGAACCAT 
TTGGGACATT TTCTTCTCGC AAGGTTGTTG CTTGATGACT TGAAGAAATC 
TGATTACCCT TCAAAGCGTC TCATCATCGT CGGATCCATT ACCGGGAACA 
CGAATACATT GGCGGGTAAT GTACCACCGA AGGCGAATCT CGGGGATTTG 
AGGGGTTTAG CCGGCGGATT AAACGGTTTA AACAGCTCAG CTATGATTGA 
TGGAGGAGAT TTCGACGGTG CAAAGGCTTA CAAAGACAGT AAAGTCTGCA 
ATATGTTGAC AATGCAAGAG TTTCACAGGC GTTTCCATGA AGAAACTGGA 
GTCACTTTCG CTTCGCTTTA CCCCGGTTGC ATCGCCTCCA CAGGTTTATT 
CCGAGAGCAC ATTCCTCTCT TCCGTGCCCT CTTCCCTCCC TTTCAGAAGT 
ACATCACTAA AGGATATGTC TCCGAAACAG AGTCAGGCAA AAGACTTGCT 
CAGGTGGTGA GTGATCCAAG CTTGACGAAA TCAGGGGTTT ATTGGAGCTG 
GAACAATGCT TCGGCTTCTT TTGAGAACCA GTTATCAGAA GAAGCAAGTG 
ACGTTGAGAA GGCTCGTAAA GTGTGGGAGA TCAGTGAGAA GCTCGTGGGC 
TTGGCCTAAT AAACTTGAAG TCTGTTAAAT TTGATGACAC CTCTCGGTAC 
CAATCGAAGA AATCTAGTGA ATTTCCGGGA TTTTTAGATA TCTGATTCTG 
TTGCGAAGTT TTTTTATCCT TATTAGTGTC TGTTGAGTGT AGATTGCTTG 
GCGAGTAGCC CACAATAAAG AAATAAAAAT GGCGAATCTT TAGCTTTATT 
TACTCTGTTT TTCATCGAAA CAGATTCAGT AATATATACT CTGTTTTT

Gene models with high sequence identity

AT4G27440.1 [+] show detail - protochlorophyllide oxidoreductase B
E-value: 0; Score: 99.93

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Glucose/ribitol dehydrogenase	3.5e-07
FPrintScan	Glucose/ribitol dehydrogenase	3.5e-07
FPrintScan	Glucose/ribitol dehydrogenase	3.5e-07
HMMTigr	Light-dependent protochlorophyllide reductase	1.4e-251
HMMPfam	Short-chain dehydrogenase/reductase SDR	1.7e-18
HMMPanther	PROTOCHLOROPHYLLIDE REDUCTASE	1.4e-181
HMMPanther	Short-chain dehydrogenase/reductase SDR	1.4e-181
Gene3D	NAD(P)-binding domain	7.2e-41
superfamily	NAD(P)-binding domain	1.3e-40

See the detailed result >

AT4G27440.1

Model type: Protein coding
Short Description: protochlorophyllide oxidoreductase B
Curator Summary: light-dependent NADPH:protochlorophyllide oxidoreductase B
Computational Description: protochlorophyllide oxidoreductase B (PORB); FUNCTIONS IN: oxidoreductase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process, response to ethylene stimulus; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: protochlorophyllide oxidoreductase A (TAIR:AT5G54190.1); Has 19396 Blast hits to 19385 proteins in 2086 species: Archae - 175; Bacteria - 10514; Metazoa - 1820; Fungi - 1776; Plants - 1038; Viruses - 0; Other Eukaryotes - 4073 (source: NCBI BLink).
Link: InterPro Scan - TAIR