F15718

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15718

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15718

Determination of introduced cDNA(s)

  • RAFL05-18-O03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-O03 - Resource: pda01315

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-18-O03 - full reading 
    CTCTTCCTCT CTTCTCTCTC AAATCTAGAA AGAGAAAAAG TCTTAAATTT 
    GTCTCATTTA TGCGATAAGA ACCACAATTC CTCTATCAAA ATCTCTCTCT 
    CTGACATACC CAGTTGGAAA AATTCAATCT TTTATCCCTA AGATTCGATC 
    TTTCTTCTTG GGAAGTTGAT AAATGTTCAA GGAAACATAA AAAAGAGAAG 
    ATTTTTGAAT AAAGGTTGAA GAAAAATGCA GGATCCAGCA GCATATTACC 
    AGACGATGAT GGCGAAGCAA CAACAACAAC AACAACCACA GTTTGCAGAG 
    CAAGAACAGT TAAAGTGTCC TCGTTGTGAC TCACCAAACA CTAAATTCTG 
    TTACTACAAC AACTACAATC TCTCACAGCC TCGTCACTTT TGCAAAAGCT 
    GTCGTCGTTA CTGGACTAAA GGCGGCGCTC TCCGTAACGT TCCCGTCGGT 
    GGTGGTTCTC GTAAGAACGC AACCAAACGA TCCACTTCTT CTTCTTCTTC 
    TGCTTCCTCT CCTACCAACA GTAGCCAAAA CAAGAAGACG AAAAACCCGG 
    ATCCGGATCC TGATCCACGT AATTCTCAAA AACCGGATTT GGATCCGACC 
    CGGATGCTTT ACGGGTTTCC GATCGGTGAC CAAGACGTGA AGGGTATGGA 
    GATTGGTGGA AGCTTTAGCT CGTTGTTGGC GAATAATATG CAGCTTGGTC 
    TTGGAGGAGG AGGGATCATG CTTGACGGGT CGGGTTGGGA TCATCCGGGT 
    ATGGGTTTGG GTTTGAGGAG AACCGAACCG GGTAATAATA ATAATAACCC 
    ATGGACCGAT CTGGCTATGA ACAGAGCGGA GAAAAACTGA AGAAGAAAAG 
    AAGAGAGGGG TATTTTGGTA AATTATAGCA AACTGATTTT GGGTGACTTG 
    AGCCATCACG TAGACACTGA ACAGTTTCGA TCATGTTTAT GTCATTTTGG 
    TAATATTATT ATTATTCCTC CTCCTACTTT ATTTCTATTT ATATAATCGG 
    TTTTGTCGTA ATTTTAATCC TGTGTAATAG AAAGAAATTT CTCTAAAAAA 
    AAAAAAAAAA

    Gene models with high sequence identity

    1. AT3G21270.1 [+] show detail - DOF zinc finger protein 2
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, Dof-type 29.255
    HMMPfam Zinc finger, Dof-type 2.4e-37
    PatternScan Zinc finger, Dof-type 0
    BlastProDom Zinc finger, Dof-type 2e-23

    See the detailed result >

    AT3G21270.1

    Model type
    Protein coding
    Short Description
    DOF zinc finger protein 2
    Curator Summary
    Encodes Dof zinc finger protein adof2.
    Computational Description
    DOF zinc finger protein 2 (DOF2); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DOF zinc finger protein 1 (TAIR:AT1G51700.1); Has 1111 Blast hits to 1102 proteins in 62 species: Archae - 0; Bacteria - 5; Metazoa - 2; Fungi - 4; Plants - 1092; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR