F15737

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15737

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
T2  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15737

Determination of introduced cDNA(s)

  • RAFL05-09-K18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-09-K18 - Resource: pda01045

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-09-K18 - full reading 
    AACAAAAAAG AGAGAGAGAA CCTAAAAAGA AGAGAAGAGA AAGAGAGATC 
    CGAAATGTCG GTGACATCAA CGGTGGAGGA GAACCACCAG AAAAATCCAT 
    CAACGCCGGC GGCGGTGGAG GAGAAGAAGA AGAGGAGATG GGTGTTTTGG 
    GATAGAAGGT GGAGGAGATT AGATTATGTG AAATTCTCAG CTTCTTTCAC 
    TGTTCATTCT CTTGCTCTCT TGGCTCCGTT TTATTTCACT TGGTCGGCTC 
    TTTGGGTTAC GTTTTTGTTT TACACCATCG GTGGTCTTGG TATCACCGTC 
    TCTTATCATC GCAACTTGGC TCACCGGAGT TTCAAAGTCC CTAAATGGCT 
    TGAGTATCTC TTAGCCTATT GTGCCCTTCT CGCTATTCAG GGAGATCCGA 
    TTGATTGGGT GAGTACACAT CGTTACCATC ACCAGTTCAC GGATTCAGAA 
    CGTGATCCAC ATAGTCCTAA GGAAGGTTTT TGGTTTAGTC ATCTTCTTTG 
    GATCTATGAC TCTGCCTATC TTGTTTCAAA GTGTGGAAGA AGAGCAAACG 
    TGGAGGATTT GAAGAGGCAA TGGTTTTATA GGTTTCTTCA GAAAACAGTG 
    CTATTTCACA TTTTAGGATT GGGTTTCTTT CTCTTCTACC TTGGTGGCAT 
    GTCCTTCGTT ACTTGGGGAA TGGGGGTAGG AGCAGCATTG GAAGTGCACG 
    TGACTTGCCT CATAAATTCA CTCTGCCATA TTTGGGGCAC TCGAACTTGG 
    AAGACCAATG ACACTTCTCG TAATGTTTGG TGGTTATCGG TATTTTCATT 
    TGGAGAGAGT TGGCACAACA ATCATCATGC GTTCGAGTCA TCGGCTAGAC 
    AAGGACTTGA ATGGTGGCAA ATAGACATTT CGTGGTACAT TGTTCGGTTT 
    TTCGAAATTA TCGGTTTAGC GACCGATGTG AAAGTGCCAA CGGAGGCTCA 
    ACGACGTCGT ATGGCTATAG TTCGTTGATG GAAATTGCGG GAAGAGCATA 
    GAAAAAGGGA TCTATTCTAT GTAATTAGAA TAATTTCTAA TCCTAAAAGA 
    GAGTTATTGT TTTATTTTCT TTATTACTAC TTTTGAAGTT TTGGGTTAAC 
    GCAAAGGACG TTTCCGATGT GTTTTGGTGT TGGACCAAGT TGATTAAGAT 
    ATTTGTCGTA ATTGGTACTT ATATATAAAA TCTTAGTGGG GACAATTAAT 
    ACGTTAATTA CGGTCTCTAT GTGAGACTTA TTTTAATAAA AAAAAAAAAA 
    AAA

    Gene models with high sequence identity

    1. AT2G31360.1 [+] show detail - 16:0delta9 desaturase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Fatty acid desaturase, type 1 1.2e-19
    HMMPanther DELTA 9 DESATURASE 8.5e-187
    HMMPanther ACYL-COA DESATURASE 8.5e-187
    FPrintScan Fatty acid desaturase, type 1, core 4e-27
    FPrintScan Fatty acid desaturase, type 1, core 4e-27
    FPrintScan Fatty acid desaturase, type 1, core 4e-27
    FPrintScan Fatty acid desaturase, type 1, core 4e-27
    FPrintScan Fatty acid desaturase, type 1, core 4e-27

    See the detailed result >

    AT2G31360.1

    Model type
    Protein coding
    Short Description
    16:0delta9 desaturase 2
    Curator Summary
    homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression up-regulated by cold temperature.
    Computational Description
    16:0delta9 desaturase 2 (DS2); FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: delta 9 desaturase 1 (TAIR:AT1G06080.1); Has 3454 Blast hits to 3454 proteins in 832 species: Archae - 0; Bacteria - 1553; Metazoa - 797; Fungi - 236; Plants - 106; Viruses - 4; Other Eukaryotes - 758 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR