F15828

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15828

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15828

Determination of introduced cDNA(s)

  • RAFL05-05-O12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-05-O12 - Resource: pda01110

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-05-O12 - full reading 
    TGAGACTCTG GCATGTCATC AATGTTGTCC CCGCCGGTAA AGAAGAGGAA 
    GATAGTGGCG CCGCAATCGC AGTCGGCATC GGCCTCGTTT CAGTCGCTTC 
    CCGATGATTT GATATTGAGC ATCGTCGCTC GCGTCCCGAG ATTGTACCAT 
    CGGACAGTCT CGCTCGTCTG CAAGAGCTTT CGATCTCTTC TAGTTTCACC 
    GGAGCTTTAC AAGGCCCGAT CAGTCTCAGG CCACACCGAG AGCTGTCTCT 
    ATCTGTCCAT AGCGTGTTAT CCTGATTATC GCATGTTCAC CCTCTGCCGG 
    AAACCTGATC AAACCCTAAC CACCAGTGAG GAGGAGGAGA AGAAGAAATC 
    AAATGGTTAT TATTTGGCTC CAGTCCCAGA TCCAGATTCT CATCCTGTCT 
    ACTTCTCGAG TCTCGTCACG GTTGGTTCTG ATATCTACAA CATTGCCGGT 
    TCGCACGCCT CCTCTAACGT CTCGATTCTG GATTGCCGGT CAAACACGTG 
    GCGCGAGGCT CCGAGATTGG GCGTGGAGCT AACCTCAGTT TCTGCTAGCG 
    TCCTTGATCG AAAGATATTT GTAGTAGGAA TGTACGCAGA TGATGAAGAA 
    TCTGAATCCA AGAACGACTT CTTTGAGGTG TTGGACACAG AAACACACAC 
    TTGGGATCCT CAGCCCTTCA ATTGCAGCGA GACAAAAGAC AAGTTTTTAA 
    ACTGCAGAAC CGCATTTATT GACGGAAAGT TCCTCGTGAA ACCTTGGATT 
    CATAGAGGGG TGGTTGCTTA CAATTCCAAG GAAAGTAGAT GGGAACCGGT 
    TCAAACGAAG ATGGCTATGT CCATGTTTAA TGATTCTTAT TGCCAGATAC 
    ACAATGTTAT CTACTTAGCT TTTGACGGAA GGATCAGATG GTATGACGAT 
    GCGCTAAACT GTTGGGGAGA CGTCCAGGGT TTGCTAGAAC TGGGTAACAT 
    CCCTCATGGT CCTTCTTGTG TTAGATTGGC TGATTATCGT GGAAACATTG 
    CGGTTTTCTG GTTCAGATAT TTACCTGATA ATGATGACTA CAAATGGAAG 
    ATGATTTGGT GTGCCGAGAT TGCGCTTGAA AGACGCACTA GTTGGGAGAT 
    TTGGGGGAAA GTTTTGTGGT TTGATCCTGT TCTTACTGTC CCTGCAGATT 
    ATGAGTTTGT CAAAGCTCTT GCTGCTACTG TTTGATCGTG TGTATTTATT 
    TGGTAAAATC AAAAAAAAAA AAAAAAAAAA AAAGAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT3G06570.1 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther KELCH-RELATED 0.00017
    HMMPanther Kelch related 0.00017
    ProfileScan F-box domain, cyclin-like 9.444
    HMMSmart F-box domain, cyclin-like 0.0001
    superfamily Galactose oxidase/kelch, beta-propeller 1.5e-41
    Gene3D Kelch-type beta propeller 6.7e-20
    HMMPfam Kelch repeat type 2 0.00011
    HMMPfam Kelch repeat type 1 0.00014
    HMMPfam F-box domain, cyclin-like 1.6e-05

    See the detailed result >

    AT3G06570.1

    Model type
    Protein coding
    Short Description
    Galactose oxidase/kelch repeat superfamily protein
    Computational Description
    Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G51250.1); Has 953 Blast hits to 929 proteins in 27 species: Archae - 0; Bacteria - 11; Metazoa - 4; Fungi - 0; Plants - 934; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR